SILENT_MODE BLOCK_FILE jp_NBXIOUA.concise.blc MAX_NSEQ 292 MAX_INPUT_LEN 294 OUTPUT_FILE jp_NBXIOUA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 144 281 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 282 144 291 H SPACE SUB_CHARS 1 282 144 291 E SPACE SUB_CHARS 1 282 144 291 - SPACE HELIX 3 285 15 COLOUR_TEXT_REGION 3 285 15 285 50 HELIX 26 285 49 COLOUR_TEXT_REGION 26 285 49 285 50 HELIX 58 285 93 COLOUR_TEXT_REGION 58 285 93 285 50 HELIX 100 285 104 COLOUR_TEXT_REGION 100 285 104 285 50 HELIX 108 285 127 COLOUR_TEXT_REGION 108 285 127 285 50 STRAND 59 290 59 COLOUR_TEXT_REGION 59 290 59 290 51 HELIX 3 290 15 COLOUR_TEXT_REGION 3 290 15 290 50 HELIX 26 290 49 COLOUR_TEXT_REGION 26 290 49 290 50 HELIX 58 290 58 COLOUR_TEXT_REGION 58 290 58 290 50 HELIX 60 290 93 COLOUR_TEXT_REGION 60 290 93 290 50 HELIX 100 290 104 COLOUR_TEXT_REGION 100 290 104 290 50 HELIX 108 290 126 COLOUR_TEXT_REGION 108 290 126 290 50 STRAND 135 291 137 COLOUR_TEXT_REGION 135 291 137 291 51 HELIX 3 291 15 COLOUR_TEXT_REGION 3 291 15 291 50 HELIX 26 291 49 COLOUR_TEXT_REGION 26 291 49 291 50 HELIX 58 291 72 COLOUR_TEXT_REGION 58 291 72 291 50 HELIX 77 291 93 COLOUR_TEXT_REGION 77 291 93 291 50 HELIX 99 291 104 COLOUR_TEXT_REGION 99 291 104 291 50 HELIX 108 291 127 COLOUR_TEXT_REGION 108 291 127 291 50