SILENT_MODE
BLOCK_FILE jp_z9GtisT.concise.blc
MAX_NSEQ 190
MAX_INPUT_LEN 192
OUTPUT_FILE jp_z9GtisT.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 61 179   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 180 61 189 H SPACE
SUB_CHARS 1 180 61 189 E SPACE
SUB_CHARS 1 180 61 189 - SPACE
STRAND 15 183 19
COLOUR_TEXT_REGION 15 183 19 183 51
STRAND 26 183 27
COLOUR_TEXT_REGION 26 183 27 183 51
STRAND 41 183 42
COLOUR_TEXT_REGION 41 183 42 183 51
STRAND 58 183 59
COLOUR_TEXT_REGION 58 183 59 183 51
HELIX 3 183 10
COLOUR_TEXT_REGION 3 183 10 183 50
HELIX 45 183 54
COLOUR_TEXT_REGION 45 183 54 183 50
STRAND 15 188 19
COLOUR_TEXT_REGION 15 188 19 188 51
STRAND 26 188 29
COLOUR_TEXT_REGION 26 188 29 188 51
STRAND 41 188 42
COLOUR_TEXT_REGION 41 188 42 188 51
STRAND 58 188 60
COLOUR_TEXT_REGION 58 188 60 188 51
HELIX 3 188 10
COLOUR_TEXT_REGION 3 188 10 188 50
HELIX 46 188 54
COLOUR_TEXT_REGION 46 188 54 188 50
STRAND 15 189 19
COLOUR_TEXT_REGION 15 189 19 189 51
STRAND 26 189 27
COLOUR_TEXT_REGION 26 189 27 189 51
STRAND 42 189 42
COLOUR_TEXT_REGION 42 189 42 189 51
STRAND 58 189 59
COLOUR_TEXT_REGION 58 189 59 189 51
HELIX 3 189 11
COLOUR_TEXT_REGION 3 189 11 189 50
HELIX 45 189 54
COLOUR_TEXT_REGION 45 189 54 189 50