SILENT_MODE BLOCK_FILE jp_blNaSGb.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_blNaSGb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 300 23 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 24 300 33 H SPACE SUB_CHARS 1 24 300 33 E SPACE SUB_CHARS 1 24 300 33 - SPACE STRAND 9 27 11 COLOUR_TEXT_REGION 9 27 11 27 51 STRAND 149 27 152 COLOUR_TEXT_REGION 149 27 152 27 51 STRAND 169 27 173 COLOUR_TEXT_REGION 169 27 173 27 51 STRAND 217 27 222 COLOUR_TEXT_REGION 217 27 222 27 51 STRAND 225 27 229 COLOUR_TEXT_REGION 225 27 229 27 51 HELIX 19 27 27 COLOUR_TEXT_REGION 19 27 27 27 50 HELIX 35 27 49 COLOUR_TEXT_REGION 35 27 49 27 50 HELIX 54 27 72 COLOUR_TEXT_REGION 54 27 72 27 50 HELIX 79 27 92 COLOUR_TEXT_REGION 79 27 92 27 50 HELIX 99 27 109 COLOUR_TEXT_REGION 99 27 109 27 50 HELIX 114 27 126 COLOUR_TEXT_REGION 114 27 126 27 50 HELIX 136 27 144 COLOUR_TEXT_REGION 136 27 144 27 50 HELIX 180 27 186 COLOUR_TEXT_REGION 180 27 186 27 50 HELIX 201 27 212 COLOUR_TEXT_REGION 201 27 212 27 50 HELIX 232 27 236 COLOUR_TEXT_REGION 232 27 236 27 50 HELIX 245 27 258 COLOUR_TEXT_REGION 245 27 258 27 50 HELIX 265 27 273 COLOUR_TEXT_REGION 265 27 273 27 50 HELIX 277 27 297 COLOUR_TEXT_REGION 277 27 297 27 50 STRAND 10 32 12 COLOUR_TEXT_REGION 10 32 12 32 51 STRAND 16 32 17 COLOUR_TEXT_REGION 16 32 17 32 51 STRAND 149 32 152 COLOUR_TEXT_REGION 149 32 152 32 51 STRAND 170 32 173 COLOUR_TEXT_REGION 170 32 173 32 51 STRAND 218 32 222 COLOUR_TEXT_REGION 218 32 222 32 51 STRAND 225 32 228 COLOUR_TEXT_REGION 225 32 228 32 51 HELIX 19 32 28 COLOUR_TEXT_REGION 19 32 28 32 50 HELIX 35 32 49 COLOUR_TEXT_REGION 35 32 49 32 50 HELIX 54 32 72 COLOUR_TEXT_REGION 54 32 72 32 50 HELIX 79 32 91 COLOUR_TEXT_REGION 79 32 91 32 50 HELIX 99 32 109 COLOUR_TEXT_REGION 99 32 109 32 50 HELIX 114 32 127 COLOUR_TEXT_REGION 114 32 127 32 50 HELIX 136 32 144 COLOUR_TEXT_REGION 136 32 144 32 50 HELIX 178 32 186 COLOUR_TEXT_REGION 178 32 186 32 50 HELIX 201 32 211 COLOUR_TEXT_REGION 201 32 211 32 50 HELIX 232 32 236 COLOUR_TEXT_REGION 232 32 236 32 50 HELIX 245 32 258 COLOUR_TEXT_REGION 245 32 258 32 50 HELIX 266 32 273 COLOUR_TEXT_REGION 266 32 273 32 50 HELIX 277 32 297 COLOUR_TEXT_REGION 277 32 297 32 50 STRAND 8 33 11 COLOUR_TEXT_REGION 8 33 11 33 51 STRAND 169 33 174 COLOUR_TEXT_REGION 169 33 174 33 51 STRAND 217 33 222 COLOUR_TEXT_REGION 217 33 222 33 51 STRAND 225 33 230 COLOUR_TEXT_REGION 225 33 230 33 51 STRAND 245 33 247 COLOUR_TEXT_REGION 245 33 247 33 51 STRAND 295 33 298 COLOUR_TEXT_REGION 295 33 298 33 51 HELIX 19 33 25 COLOUR_TEXT_REGION 19 33 25 33 50 HELIX 37 33 49 COLOUR_TEXT_REGION 37 33 49 33 50 HELIX 53 33 72 COLOUR_TEXT_REGION 53 33 72 33 50 HELIX 80 33 92 COLOUR_TEXT_REGION 80 33 92 33 50 HELIX 100 33 110 COLOUR_TEXT_REGION 100 33 110 33 50 HELIX 115 33 126 COLOUR_TEXT_REGION 115 33 126 33 50 HELIX 134 33 144 COLOUR_TEXT_REGION 134 33 144 33 50 HELIX 148 33 153 COLOUR_TEXT_REGION 148 33 153 33 50 HELIX 203 33 213 COLOUR_TEXT_REGION 203 33 213 33 50 HELIX 232 33 237 COLOUR_TEXT_REGION 232 33 237 33 50 HELIX 248 33 258 COLOUR_TEXT_REGION 248 33 258 33 50 HELIX 264 33 273 COLOUR_TEXT_REGION 264 33 273 33 50 HELIX 277 33 294 COLOUR_TEXT_REGION 277 33 294 33 50