Jpred secondary structure prediction results

QUERY                  : LGGSPYSPFRIGLEGVWTPEVLKARASVIGKPIGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQLEKALYLPEMEALKKQILQIPNKGSGAARFLLRTAMNEMAGKTSESTADLIRFALQDTVISAPFRGYAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYESWNEGSNSALLPGLLRESQSKGMLSKCRIIENSLYIGHSYEEMFYSISPYSNQVGGPYELYPFTFFSMLQEVQGDLGFEQAFATRNFFNTLVSDRLSLMENTMLLTES : QUERY 
UniRef90_UPI00037C540B : --------LKVDLSQVFTKQELKDRAKIFAKPIGASYQSILDQVDLVHHSNGQ-EQMSASFELCNKINAYLAEHPTSGRNHALTQLKEQVSTELFKGEMKVTQKAIDAIAKTRPELAADIYMVAIEEANGEHAGLTEMMVRWANEDPYLS-PKQGYNGETPKDLGFDAKYHIELGEHYSDFK----------------------QWLEKSQANDLLSKAVLDEKTVHLGYSYQELQDLTGVESVQMAFYFLKEAAKSSDRSSGDSAEMILLKKFADRNYVSQVEAGRMDQIK-------- : UniRef90_UPI00037C540B
UniRef90_UPI0002FFA3F8 : ---GNKAKQSADLSEVFTKDQLKKNAKVFAKPIGVSYQRILDQVGLVHSTTGRD-QIAASFELNKQIDAYVEANPASGRNQAFNQLKGQITNALFNGDIQVAKEGISEIAQTRPELAARIYIIAQEEANGKNLGLTDLMVRWAKEDPYLSA-KNGYQGDIPSDLGFEAKFHVELGSQY----------------------ADFKQTLEKAQVEGLLTKAVIDEKTVHLGYTYQELQDQTGTESVQMAAYFLKEAAKKSDPTSADSAEMILLNKFADKNYITELERQRIDQIES------- : UniRef90_UPI0002FFA3F8
UniRef90_UPI0002DE78A3 : ----------LDFSKVFTREELVKSANVFGKRIGSSYQAILEQVDLVHRAVDRDLVLE-SFKLNNKIIAYLAEHPTSGRNQALTQLKEQVTSALFIGKMQVAQVGINAIAQTRPELAARIFMVAIEEANGKHVGLTDMMVRWANEDPYL-APKQGYKGGTPSDLAFDAKYHVDLGEHY----------------------ADFKQWLETSQSNGLLSKALLDEQTVHLGYSYQELQDLTGVESVQMAFYFLKEAAKKADPVSGDSAEMILLKKFADQSYLTQLNLDRMDQIE-------- : UniRef90_UPI0002DE78A3
UniRef90_D3VAK8        : ------------LNELITKDGLRKKASVFAKPIGPAYQAILDKLDHIHNLTG-NEQLSAGFELYQRITRYLNEHPDSKRNTALSGVQTQLGDIMFRGALQEVRSPLLEIAQTRPEMASRIYQIARNEARGDTPGLTDLMVRWVKEDPYLAAKL-GYQGEIPADLAFNPKFHVDLGDQFDDFK----------------------QCLSKAQDKGLLINARIDEQNVHLGYSYNELLDMTGSEDVKMAVYFLKEVAKQADPNFAGSHEAILLNRFANPAYLVQLEQGRLAQIE-------- : UniRef90_D3VAK8
UniRef90_U7QWC8        : ------------LHNLITSDNLRKEAAVFAKRIGSSYQGILDGLHRIHTLSG-NEQLTAGFELHQRITRYLKTHPDSKRNTSLRRMQTQLEDLMFTGTLQMVRSPLLEMAETRPDMASRIYQIACNETRGNTPGLTDLMVRWVKEDPYL-ATKTGYQGEIPNDLPFDPKFHVELGAQFDDFKK----------------------WLNIAQSQGLLTHARLDEKRVHLGYSYNELLDMTGVESVQMAVYFLKEAAKQADPGFAGSQEAILLNRFANPAYLAQLEQGRLSQIE-------- : UniRef90_U7QWC8
UniRef90_T0PP68        : ------------FADAYSPDELKKAAQVFTKPIGESYQGILDQLAVLHGATGQA-QVEAALRLNKLIDDYQTRHEGSGRNPALSKLQSQLNGGLYRGELASLQTDVATLAKSRPDLAALVIGKAAEEANGKHPGLTQMLLRWVAQDPYLAA-KGGYQGQAPADLPFDASFHVALGEQYGELKT----------------------WLADAQSKGLLSKAVLDEKVLHLGYSYQELQDMTGDQSAQMTVYFIKEAAKQAAPGSELSAEMIMLDKFADRRYLGELESRRLEQVEN------- : UniRef90_T0PP68
UniRef90_T0PP68        : ---------------------------------------------------------------------------------------------------------------------------------GETRFDGQIIIQTE-DDPVAAKAAASLAGKHPDRLDADGNYRVVYGDPAQLAGNIRWQVVGHGRDGDEQNNSRLSGY-SADELAGRLRRERLQEAGVASKPSYVSLSLVSDDQQTGFASRFIKALAQVSARSSEVAVDL-------------------------------- : UniRef90_T0PP68
UniRef90_B5AGW4        : -----------------------------------------------------DERQGLMHELMELIDLYEESQPFSERLNAFRELRTQLEKALYLPEMEALKKQILQIPNKGSGAARFLLRTAMNEMAGKTSESTADLIRFALQDTVISAPFRGYAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYESWNEGSNSALLPGLLRESQSKGMLSKCRIIENSLYIGHSYEEMFYSISPYSNQVGGPYELYPFTFFSMLQEVQGDLGFEQAFATRNFFNTLVSDRLSLMENTMLLTES : UniRef90_B5AGW4
UniRef90_C4TVM7        : --GKNNPPVEIESNVIISKDELKKQASVMGKPIGYSYKKILNIIDLI-NSTSNSERIKNIFILKSEIERYINEHPSSGRNKAFLTLGEKIDKSLFNSKMQPAKNAILRLSKTQPEMAARLYEVAARESQGSHVGLTNMMHVWISEDGYLTL-LKGFEGKIPDRLNFDPTYHIATGDQFDECKTK----------------------LLQAQSNGELRQVYINESTFTIGYTYEEMFRARGSENSQFFSYILNEVAGR-NNSTDRSKELNWLDNCADKKFLKQLQLSRLDQIES------- : UniRef90_C4TVM7
UniRef90_G2H0L1        : ------------FRRVMSRDDLLKI--IPMSFIKTGYQPILMTLDKLHNTRGIEKTQTA-FILKNQLRDYIAKQPDPRRNAAFSKLVDQLNNALFSADMAHFKTVINDIGATRPALANQLYLYAFNEAHGDNLGLTDAMIRAVQTDPYLHLPKSRFSGALPTNLDFASTYQVKLASAED--------------------FAEFKRLLLHAQEQDQLNKVFLDEKTIHLGYHYQELIDPQPNARTQQAMDYLQSAIAKIRDNQDADAEFFMLAKFGDKNYIDNLQLERLADIK-------- : UniRef90_G2H0L1
UniRef90_G2GXI0        : ------------------------------------YNDIRHHFDTLFLENTDKKILKNIFSLQLKIQSYINNYPKFPSVAALKELQKKIHNIVFPDADFKLQRSIIIISKIDPEQAARIYMSIHDHNKGKAEPNINALI---FSDPYLQ-PFKGFTGE-ENDIDFNAKFHIPLGNKFTVFKAN----------------------LLAAQAQNVLNNVYLDEKKIHIGYSYNELTALKGNEHVGIIIYTIILAIQEKRDSNFIQTDLLMLKNFANQRYLQDMQRERLADI--------- : UniRef90_G2GXI0
UniRef90_W6AN97        : --------FDVNFDDVAAVSEVKKQAAVTGKRIGNSYQDILDKLAQFHETSPVGKRVIA-QELESAISQYVVEHPSSGRNSALLHLQQSLEDSLLNHSQQESLDGTARKANTQDVDSWDTVAVTSNDDSGETRFDGQLIIQTEN-DPAAAKAAANLAGKHPDSLDTDGKYRVVYGDPEQLSGKLRWQVVGHGRDESDNNNTHLSG----------------------------------------------------------------------------------------------- : UniRef90_W6AN97
UniRef90_M7FS34        : ------KQTTLDLSSVLTKDELKNEAKVFAKPIGESYQKILDQLDLLH-ATQGDKQLEAGLRLNNLVDDYVSSHEKSGRNTALLSLKNRVTESLYSNVAQESRVEIAKLSADRIDLAVDLLRSSTNEVSSVVDKSLADGTKYNSQESLAVLSKQ-------------------------------------------------------------------------------------------------------------------------------------------------- : UniRef90_M7FS34
UniRef90_G2H1M0        : --------------DVMSATRLHSHISAVGDTLGPLYLQIYADLDKLHTTTA-AEQIEIAFVLLKNIDNYLRDDIASSGLSVISTLQNQINQVLFTHPSDPLRKNILDMMKLQPLLAADIYQSVL-----KHPPATRMMSRYAGRKNFWHIKLEGFSGSVPNALGFKAVYHFPFSGEFHGLDTVLANEQGIG------------------------------------------------------------------------------------------------------------ : UniRef90_G2H1M0
UniRef90_W3V298        : ----------------WTPTELFNYAQV----LQEAQLEVIAKVEELAALSGKNKALETVVM-------------ESDGTPLLNKLITKVRDPLLNSLQATSAAELVHK----PVNLWQTVAVTPQTDGRETRFDGQIIFQME-DDPVATKAAANLAGKHPDSLDSDGQYRVIYGDPAKLSGKLRWQLVGHGRSESEQNNTRLSG----------------------------------------------------------------------------------------------- : UniRef90_W3V298
UniRef90_C0AZ64        : ----------VEFNDIYYRDLIEINSYVKGKNAKE-LKEIVSLIDILIEGNIYFDKLIASFSLINKINLFNSNNKSISLIEILNKVKNKLESKLFYDRLNYGKEKLIQLAEKNSLVAAKFYQLMVNEISDGTHGISNFIYNQIIENPYLPLDKKRSVG-----------------------------VEGYDYTIEFHNSSQYVNEIVEGINIPELKNTILIENKLHLKENYKKLSEYRSDKYVN---KLLNLIETEIDINKGDKTSELYFELFRNNQFINRMIMHEISQLEN------- : UniRef90_C0AZ64
UniRef90_B4F2V0        : ----------LEFNDVYYRDLIKINSYLLNGKKSFSLNKIVSLIDTL-RGNIYFDKITASFSIIDEIILFNQNNENISLVDILNQVKQKIEDKLFYGDLLYGKEKLIALAQKNSLVAAIFYRMMVNEINEGYTGISNFIYEQIIDNPFLILDKNRNVGVV----GYD--YTINFKNNYKALKEIIDGIDISEIKNI---------FLLD------------DENRLHLKVTYQRLSEYRNNKYVNKLLHLIIDSIKKID-NTGVYRDL-YLEFFSNHQFNNRVIIHEIAQLES------- : UniRef90_B4F2V0
UniRef90_Q7N1Z0        : -------------ESLVVYQALQATDEIKRKQILNSYTANYQDLADIAGESGVNQALDNAFETQEFYQKYAVVKPQSR--PAVEDLEG------LSGTNKGVEPTIIGDSHKKPVDGWQKVDVTPQTDGRETRFDGQIILQME-DDPIAARAAANLAGKHPDSLDANGKYRVVYGDLAKLSNKLRWQVVGHGRDTSEQNNIRLS------------------------GYSADEL--ATKLKQFYQAAKLGKQAISKPDHISLVGCSLISDNKFA-RRFITELD---------------- : UniRef90_Q7N1Z0
UniRef90_B6VN12        : ----------------------------------NSYTANYQDLAEIAGENGVNQALDNAFETQEFYQKYAVVKPQNR--PAMEDLDG------LSGKNKEVEPTIIDDSHLNPVDGWQTVDVTPQIDGRETRFEGQIILQME-DDPIAARAAANLAGKHPDSLDANGKYRVVYGDLSKLSNKLRWQVVGHGRETSEQNNIRLSG----------------------------------------------------------------------------------------------- : UniRef90_B6VN12

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291------- :
OrigSeq                : LGGSPYSPFRIGLEGVWTPEVLKARASVIGKPIGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQLEKALYLPEMEALKKQILQIPNKGSGAARFLLRTAMNEMAGKTSESTADLIRFALQDTVISAPFRGYAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYESWNEGSNSALLPGLLRESQSKGMLSKCRIIENSLYIGHSYEEMFYSISPYSNQVGGPYELYPFTFFSMLQEVQGDLGFEQAFATRNFFNTLVSDRLSLMENTMLLTES : OrigSeq

Jnet                   : --------EEE-------HHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH------HHHHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHH----EEEE----------------EEEEE------HHHHHHH--------------HHHHHHHHHHHH----EEEEEE--EEEEE--HHHHH--------HHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm                   : ---------EEE---EE-HHHHHHHHHH------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHH--------HHHHHHHHH----EEEE-----------------EEEE----HHHHHHHHH--------------HHHHHHHHHHH------EEEEE--EEEE---HHHHH--------HHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm                  : -------EEEE-------HHHHHHH-----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHH---------------EEEEEE----------------------------HHHHHHHHHHH---EEEEEE--EEEEEE-HHHHHH-------EEEHHHHHHHHHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHEEEE-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : --------B-B-B--BBB---B---B-B----BB-BB--BB--B--BB-------BB-BBB-BB--B--BB-------BB-BB--B---B---BB---B--BB--BB-BB-----BB-BBB-BBB--B---B--BB-BBB-BB---BBB-B-B--B-B-B---B-B-B-BBB-BB--B--B---B--B-BB-------B---B--BB--B-----B--BBB----BBBBB-B--B--------B-BBB-BBB-BB--B-----B-BBBBBB--BB---BB--B---BB--B-BBB-B--- : Jnet_25
Jnet_5                 : ------------B--------B--------------B--B---B--B---------B--B--B---B--------------BB--B---B---------------B----------B--BB--BB----------B--BB--------B--------------------B-B------------------------------B---B--------B--B------B-B------B------------B--B-------------------B--------B-------B--B--------- : Jnet_5
Jnet_0                 : ---------------------B-----------------B---B------------------------------------------------------------------------B------B-----------------------------------------------B-------------------------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 998887422630787320788887442288766524799999999987448708999999999999999861478876278999999987511578761789999998704880578898888750078887530899999860576212101367777777777773188862552111111210356677777777760378999999822571178860755888214465641478888523568899998862378600399999874487589999999998887640420389 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.