SILENT_MODE BLOCK_FILE jp_cFcYtvL.concise.blc MAX_NSEQ 78 MAX_INPUT_LEN 80 OUTPUT_FILE jp_cFcYtvL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 137 67 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 68 137 77 H SPACE SUB_CHARS 1 68 137 77 E SPACE SUB_CHARS 1 68 137 77 - SPACE STRAND 56 71 59 COLOUR_TEXT_REGION 56 71 59 71 51 HELIX 14 71 22 COLOUR_TEXT_REGION 14 71 22 71 50 HELIX 24 71 33 COLOUR_TEXT_REGION 24 71 33 71 50 HELIX 63 71 79 COLOUR_TEXT_REGION 63 71 79 71 50 HELIX 107 71 121 COLOUR_TEXT_REGION 107 71 121 71 50 STRAND 55 76 58 COLOUR_TEXT_REGION 55 76 58 76 51 HELIX 14 76 22 COLOUR_TEXT_REGION 14 76 22 76 50 HELIX 24 76 32 COLOUR_TEXT_REGION 24 76 32 76 50 HELIX 59 76 60 COLOUR_TEXT_REGION 59 76 60 76 50 HELIX 62 76 79 COLOUR_TEXT_REGION 62 76 79 76 50 HELIX 107 76 121 COLOUR_TEXT_REGION 107 76 121 76 50 STRAND 56 77 59 COLOUR_TEXT_REGION 56 77 59 77 51 STRAND 127 77 129 COLOUR_TEXT_REGION 127 77 129 77 51 STRAND 134 77 135 COLOUR_TEXT_REGION 134 77 135 77 51 HELIX 14 77 22 COLOUR_TEXT_REGION 14 77 22 77 50 HELIX 25 77 34 COLOUR_TEXT_REGION 25 77 34 77 50 HELIX 63 77 79 COLOUR_TEXT_REGION 63 77 79 77 50 HELIX 107 77 122 COLOUR_TEXT_REGION 107 77 122 77 50