SILENT_MODE
BLOCK_FILE jp_vqWwvqD.concise.blc
MAX_NSEQ 59
MAX_INPUT_LEN 61
OUTPUT_FILE jp_vqWwvqD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 48   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 49 97 58 H SPACE
SUB_CHARS 1 49 97 58 E SPACE
SUB_CHARS 1 49 97 58 - SPACE
STRAND 76 52 80
COLOUR_TEXT_REGION 76 52 80 52 51
HELIX 2 52 10
COLOUR_TEXT_REGION 2 52 10 52 50
HELIX 24 52 37
COLOUR_TEXT_REGION 24 52 37 52 50
HELIX 44 52 53
COLOUR_TEXT_REGION 44 52 53 52 50
HELIX 61 52 72
COLOUR_TEXT_REGION 61 52 72 52 50
HELIX 86 52 95
COLOUR_TEXT_REGION 86 52 95 52 50
STRAND 76 57 80
COLOUR_TEXT_REGION 76 57 80 57 51
HELIX 2 57 10
COLOUR_TEXT_REGION 2 57 10 57 50
HELIX 26 57 37
COLOUR_TEXT_REGION 26 57 37 57 50
HELIX 44 57 53
COLOUR_TEXT_REGION 44 57 53 57 50
HELIX 61 57 72
COLOUR_TEXT_REGION 61 57 72 57 50
HELIX 87 57 95
COLOUR_TEXT_REGION 87 57 95 57 50
STRAND 76 58 80
COLOUR_TEXT_REGION 76 58 80 58 51
HELIX 2 58 9
COLOUR_TEXT_REGION 2 58 9 58 50
HELIX 24 58 37
COLOUR_TEXT_REGION 24 58 37 58 50
HELIX 44 58 53
COLOUR_TEXT_REGION 44 58 53 58 50
HELIX 60 58 72
COLOUR_TEXT_REGION 60 58 72 58 50
HELIX 85 58 95
COLOUR_TEXT_REGION 85 58 95 58 50