SILENT_MODE
BLOCK_FILE jp_byZUqzx.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_byZUqzx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 108 10   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 11 108 20 H SPACE
SUB_CHARS 1 11 108 20 E SPACE
SUB_CHARS 1 11 108 20 - SPACE
STRAND 51 14 56
COLOUR_TEXT_REGION 51 14 56 14 51
HELIX 12 14 24
COLOUR_TEXT_REGION 12 14 24 14 50
HELIX 34 14 42
COLOUR_TEXT_REGION 34 14 42 14 50
HELIX 50 14 50
COLOUR_TEXT_REGION 50 14 50 14 50
HELIX 69 14 105
COLOUR_TEXT_REGION 69 14 105 14 50
STRAND 34 19 36
COLOUR_TEXT_REGION 34 19 36 19 51
STRAND 50 19 56
COLOUR_TEXT_REGION 50 19 56 19 51
HELIX 12 19 24
COLOUR_TEXT_REGION 12 19 24 19 50
HELIX 37 19 42
COLOUR_TEXT_REGION 37 19 42 19 50
HELIX 69 19 104
COLOUR_TEXT_REGION 69 19 104 19 50
HELIX 12 20 25
COLOUR_TEXT_REGION 12 20 25 20 50
HELIX 34 20 42
COLOUR_TEXT_REGION 34 20 42 20 50
HELIX 47 20 56
COLOUR_TEXT_REGION 47 20 56 20 50
HELIX 67 20 84
COLOUR_TEXT_REGION 67 20 84 20 50
HELIX 86 20 94
COLOUR_TEXT_REGION 86 20 94 20 50
HELIX 96 20 106
COLOUR_TEXT_REGION 96 20 106 20 50