SILENT_MODE BLOCK_FILE jp_ojnCkdR.concise.blc MAX_NSEQ 1238 MAX_INPUT_LEN 1240 OUTPUT_FILE jp_ojnCkdR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 175 1227 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1228 175 1237 H SPACE SUB_CHARS 1 1228 175 1237 E SPACE SUB_CHARS 1 1228 175 1237 - SPACE STRAND 5 1231 9 COLOUR_TEXT_REGION 5 1231 9 1231 51 STRAND 21 1231 28 COLOUR_TEXT_REGION 21 1231 28 1231 51 STRAND 33 1231 38 COLOUR_TEXT_REGION 33 1231 38 1231 51 STRAND 64 1231 68 COLOUR_TEXT_REGION 64 1231 68 1231 51 STRAND 75 1231 81 COLOUR_TEXT_REGION 75 1231 81 1231 51 STRAND 90 1231 91 COLOUR_TEXT_REGION 90 1231 91 1231 51 STRAND 95 1231 99 COLOUR_TEXT_REGION 95 1231 99 1231 51 STRAND 117 1231 122 COLOUR_TEXT_REGION 117 1231 122 1231 51 STRAND 140 1231 144 COLOUR_TEXT_REGION 140 1231 144 1231 51 HELIX 46 1231 50 COLOUR_TEXT_REGION 46 1231 50 1231 50 HELIX 102 1231 109 COLOUR_TEXT_REGION 102 1231 109 1231 50 HELIX 128 1231 136 COLOUR_TEXT_REGION 128 1231 136 1231 50 HELIX 155 1231 165 COLOUR_TEXT_REGION 155 1231 165 1231 50 HELIX 171 1231 171 COLOUR_TEXT_REGION 171 1231 171 1231 50 STRAND 5 1236 8 COLOUR_TEXT_REGION 5 1236 8 1236 51 STRAND 21 1236 28 COLOUR_TEXT_REGION 21 1236 28 1236 51 STRAND 33 1236 38 COLOUR_TEXT_REGION 33 1236 38 1236 51 STRAND 64 1236 68 COLOUR_TEXT_REGION 64 1236 68 1236 51 STRAND 75 1236 80 COLOUR_TEXT_REGION 75 1236 80 1236 51 STRAND 91 1236 92 COLOUR_TEXT_REGION 91 1236 92 1236 51 STRAND 96 1236 99 COLOUR_TEXT_REGION 96 1236 99 1236 51 STRAND 117 1236 122 COLOUR_TEXT_REGION 117 1236 122 1236 51 STRAND 140 1236 143 COLOUR_TEXT_REGION 140 1236 143 1236 51 HELIX 46 1236 52 COLOUR_TEXT_REGION 46 1236 52 1236 50 HELIX 102 1236 109 COLOUR_TEXT_REGION 102 1236 109 1236 50 HELIX 128 1236 137 COLOUR_TEXT_REGION 128 1236 137 1236 50 HELIX 155 1236 165 COLOUR_TEXT_REGION 155 1236 165 1236 50 HELIX 170 1236 173 COLOUR_TEXT_REGION 170 1236 173 1236 50 STRAND 5 1237 9 COLOUR_TEXT_REGION 5 1237 9 1237 51 STRAND 20 1237 27 COLOUR_TEXT_REGION 20 1237 27 1237 51 STRAND 34 1237 37 COLOUR_TEXT_REGION 34 1237 37 1237 51 STRAND 64 1237 67 COLOUR_TEXT_REGION 64 1237 67 1237 51 STRAND 75 1237 81 COLOUR_TEXT_REGION 75 1237 81 1237 51 STRAND 89 1237 91 COLOUR_TEXT_REGION 89 1237 91 1237 51 STRAND 95 1237 98 COLOUR_TEXT_REGION 95 1237 98 1237 51 STRAND 116 1237 122 COLOUR_TEXT_REGION 116 1237 122 1237 51 STRAND 140 1237 144 COLOUR_TEXT_REGION 140 1237 144 1237 51 HELIX 46 1237 49 COLOUR_TEXT_REGION 46 1237 49 1237 50 HELIX 102 1237 109 COLOUR_TEXT_REGION 102 1237 109 1237 50 HELIX 128 1237 136 COLOUR_TEXT_REGION 128 1237 136 1237 50 HELIX 156 1237 165 COLOUR_TEXT_REGION 156 1237 165 1237 50