SILENT_MODE
BLOCK_FILE jp_DpzIFIX.concise.blc
MAX_NSEQ 169
MAX_INPUT_LEN 171
OUTPUT_FILE jp_DpzIFIX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 158   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 159 121 168 H SPACE
SUB_CHARS 1 159 121 168 E SPACE
SUB_CHARS 1 159 121 168 - SPACE
STRAND 5 162 10
COLOUR_TEXT_REGION 5 162 10 162 51
STRAND 15 162 20
COLOUR_TEXT_REGION 15 162 20 162 51
STRAND 25 162 31
COLOUR_TEXT_REGION 25 162 31 162 51
STRAND 41 162 46
COLOUR_TEXT_REGION 41 162 46 162 51
STRAND 59 162 66
COLOUR_TEXT_REGION 59 162 66 162 51
STRAND 76 162 85
COLOUR_TEXT_REGION 76 162 85 162 51
STRAND 90 162 97
COLOUR_TEXT_REGION 90 162 97 162 51
STRAND 110 162 112
COLOUR_TEXT_REGION 110 162 112 162 51
STRAND 116 162 119
COLOUR_TEXT_REGION 116 162 119 162 51
HELIX 98 162 98
COLOUR_TEXT_REGION 98 162 98 162 50
STRAND 4 167 10
COLOUR_TEXT_REGION 4 167 10 167 51
STRAND 15 167 20
COLOUR_TEXT_REGION 15 167 20 167 51
STRAND 25 167 31
COLOUR_TEXT_REGION 25 167 31 167 51
STRAND 41 167 47
COLOUR_TEXT_REGION 41 167 47 167 51
STRAND 59 167 66
COLOUR_TEXT_REGION 59 167 66 167 51
STRAND 76 167 85
COLOUR_TEXT_REGION 76 167 85 167 51
STRAND 90 167 98
COLOUR_TEXT_REGION 90 167 98 167 51
STRAND 110 167 112
COLOUR_TEXT_REGION 110 167 112 167 51
STRAND 117 167 119
COLOUR_TEXT_REGION 117 167 119 167 51
STRAND 5 168 10
COLOUR_TEXT_REGION 5 168 10 168 51
STRAND 15 168 20
COLOUR_TEXT_REGION 15 168 20 168 51
STRAND 25 168 31
COLOUR_TEXT_REGION 25 168 31 168 51
STRAND 42 168 43
COLOUR_TEXT_REGION 42 168 43 168 51
STRAND 59 168 66
COLOUR_TEXT_REGION 59 168 66 168 51
STRAND 76 168 85
COLOUR_TEXT_REGION 76 168 85 168 51
STRAND 90 168 94
COLOUR_TEXT_REGION 90 168 94 168 51
STRAND 110 168 112
COLOUR_TEXT_REGION 110 168 112 168 51
STRAND 116 168 119
COLOUR_TEXT_REGION 116 168 119 168 51
HELIX 95 168 100
COLOUR_TEXT_REGION 95 168 100 168 50