SILENT_MODE BLOCK_FILE jp_ukAOBHA.concise.blc MAX_NSEQ 595 MAX_INPUT_LEN 597 OUTPUT_FILE jp_ukAOBHA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 141 584 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 585 141 594 H SPACE SUB_CHARS 1 585 141 594 E SPACE SUB_CHARS 1 585 141 594 - SPACE STRAND 95 588 95 COLOUR_TEXT_REGION 95 588 95 588 51 HELIX 4 588 20 COLOUR_TEXT_REGION 4 588 20 588 50 HELIX 35 588 45 COLOUR_TEXT_REGION 35 588 45 588 50 HELIX 50 588 53 COLOUR_TEXT_REGION 50 588 53 588 50 HELIX 69 588 88 COLOUR_TEXT_REGION 69 588 88 588 50 HELIX 104 588 128 COLOUR_TEXT_REGION 104 588 128 588 50 STRAND 28 593 29 COLOUR_TEXT_REGION 28 593 29 593 51 STRAND 138 593 139 COLOUR_TEXT_REGION 138 593 139 593 51 HELIX 4 593 20 COLOUR_TEXT_REGION 4 593 20 593 50 HELIX 36 593 45 COLOUR_TEXT_REGION 36 593 45 593 50 HELIX 47 593 47 COLOUR_TEXT_REGION 47 593 47 593 50 HELIX 50 593 54 COLOUR_TEXT_REGION 50 593 54 593 50 HELIX 69 593 88 COLOUR_TEXT_REGION 69 593 88 593 50 HELIX 104 593 128 COLOUR_TEXT_REGION 104 593 128 593 50 STRAND 49 594 53 COLOUR_TEXT_REGION 49 594 53 594 51 STRAND 58 594 61 COLOUR_TEXT_REGION 58 594 61 594 51 STRAND 94 594 96 COLOUR_TEXT_REGION 94 594 96 594 51 HELIX 4 594 19 COLOUR_TEXT_REGION 4 594 19 594 50 HELIX 31 594 45 COLOUR_TEXT_REGION 31 594 45 594 50 HELIX 69 594 88 COLOUR_TEXT_REGION 69 594 88 594 50 HELIX 104 594 129 COLOUR_TEXT_REGION 104 594 129 594 50