SILENT_MODE BLOCK_FILE jp_dwqcNPL.concise.blc MAX_NSEQ 939 MAX_INPUT_LEN 941 OUTPUT_FILE jp_dwqcNPL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 245 928 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 929 245 938 H SPACE SUB_CHARS 1 929 245 938 E SPACE SUB_CHARS 1 929 245 938 - SPACE STRAND 30 932 30 COLOUR_TEXT_REGION 30 932 30 932 51 STRAND 133 932 136 COLOUR_TEXT_REGION 133 932 136 932 51 HELIX 4 932 29 COLOUR_TEXT_REGION 4 932 29 932 50 HELIX 43 932 50 COLOUR_TEXT_REGION 43 932 50 932 50 HELIX 54 932 74 COLOUR_TEXT_REGION 54 932 74 932 50 HELIX 84 932 92 COLOUR_TEXT_REGION 84 932 92 932 50 HELIX 98 932 121 COLOUR_TEXT_REGION 98 932 121 932 50 HELIX 144 932 163 COLOUR_TEXT_REGION 144 932 163 932 50 HELIX 176 932 192 COLOUR_TEXT_REGION 176 932 192 932 50 HELIX 201 932 211 COLOUR_TEXT_REGION 201 932 211 932 50 HELIX 223 932 243 COLOUR_TEXT_REGION 223 932 243 932 50 STRAND 28 937 30 COLOUR_TEXT_REGION 28 937 30 937 51 STRAND 132 937 135 COLOUR_TEXT_REGION 132 937 135 937 51 STRAND 223 937 223 COLOUR_TEXT_REGION 223 937 223 937 51 HELIX 4 937 27 COLOUR_TEXT_REGION 4 937 27 937 50 HELIX 42 937 51 COLOUR_TEXT_REGION 42 937 51 937 50 HELIX 53 937 74 COLOUR_TEXT_REGION 53 937 74 937 50 HELIX 83 937 92 COLOUR_TEXT_REGION 83 937 92 937 50 HELIX 97 937 121 COLOUR_TEXT_REGION 97 937 121 937 50 HELIX 143 937 163 COLOUR_TEXT_REGION 143 937 163 937 50 HELIX 176 937 192 COLOUR_TEXT_REGION 176 937 192 937 50 HELIX 200 937 210 COLOUR_TEXT_REGION 200 937 210 937 50 HELIX 224 937 243 COLOUR_TEXT_REGION 224 937 243 937 50 STRAND 55 938 56 COLOUR_TEXT_REGION 55 938 56 938 51 STRAND 98 938 100 COLOUR_TEXT_REGION 98 938 100 938 51 STRAND 135 938 137 COLOUR_TEXT_REGION 135 938 137 938 51 HELIX 3 938 30 COLOUR_TEXT_REGION 3 938 30 938 50 HELIX 57 938 73 COLOUR_TEXT_REGION 57 938 73 938 50 HELIX 85 938 93 COLOUR_TEXT_REGION 85 938 93 938 50 HELIX 101 938 121 COLOUR_TEXT_REGION 101 938 121 938 50 HELIX 145 938 164 COLOUR_TEXT_REGION 145 938 164 938 50 HELIX 176 938 193 COLOUR_TEXT_REGION 176 938 193 938 50 HELIX 204 938 211 COLOUR_TEXT_REGION 204 938 211 938 50 HELIX 223 938 243 COLOUR_TEXT_REGION 223 938 243 938 50