SILENT_MODE BLOCK_FILE jp_9nCF4RP.concise.blc MAX_NSEQ 332 MAX_INPUT_LEN 334 OUTPUT_FILE jp_9nCF4RP.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 108 321 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 322 108 331 H SPACE SUB_CHARS 1 322 108 331 E SPACE SUB_CHARS 1 322 108 331 - SPACE STRAND 3 325 7 COLOUR_TEXT_REGION 3 325 7 325 51 STRAND 22 325 26 COLOUR_TEXT_REGION 22 325 26 325 51 STRAND 33 325 39 COLOUR_TEXT_REGION 33 325 39 325 51 STRAND 45 325 53 COLOUR_TEXT_REGION 45 325 53 325 51 STRAND 57 325 63 COLOUR_TEXT_REGION 57 325 63 325 51 STRAND 69 325 75 COLOUR_TEXT_REGION 69 325 75 325 51 STRAND 86 325 89 COLOUR_TEXT_REGION 86 325 89 325 51 STRAND 94 325 98 COLOUR_TEXT_REGION 94 325 98 325 51 STRAND 102 325 107 COLOUR_TEXT_REGION 102 325 107 325 51 STRAND 2 330 7 COLOUR_TEXT_REGION 2 330 7 330 51 STRAND 22 330 26 COLOUR_TEXT_REGION 22 330 26 330 51 STRAND 33 330 39 COLOUR_TEXT_REGION 33 330 39 330 51 STRAND 45 330 54 COLOUR_TEXT_REGION 45 330 54 330 51 STRAND 57 330 63 COLOUR_TEXT_REGION 57 330 63 330 51 STRAND 69 330 75 COLOUR_TEXT_REGION 69 330 75 330 51 STRAND 86 330 89 COLOUR_TEXT_REGION 86 330 89 330 51 STRAND 94 330 98 COLOUR_TEXT_REGION 94 330 98 330 51 STRAND 102 330 107 COLOUR_TEXT_REGION 102 330 107 330 51 STRAND 3 331 6 COLOUR_TEXT_REGION 3 331 6 331 51 STRAND 22 331 26 COLOUR_TEXT_REGION 22 331 26 331 51 STRAND 33 331 39 COLOUR_TEXT_REGION 33 331 39 331 51 STRAND 45 331 53 COLOUR_TEXT_REGION 45 331 53 331 51 STRAND 57 331 63 COLOUR_TEXT_REGION 57 331 63 331 51 STRAND 69 331 74 COLOUR_TEXT_REGION 69 331 74 331 51 STRAND 86 331 89 COLOUR_TEXT_REGION 86 331 89 331 51 STRAND 94 331 98 COLOUR_TEXT_REGION 94 331 98 331 51 STRAND 102 331 107 COLOUR_TEXT_REGION 102 331 107 331 51