SILENT_MODE
BLOCK_FILE jp_cqQQawT.concise.blc
MAX_NSEQ 167
MAX_INPUT_LEN 169
OUTPUT_FILE jp_cqQQawT.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 176 156   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 157 176 166 H SPACE
SUB_CHARS 1 157 176 166 E SPACE
SUB_CHARS 1 157 176 166 - SPACE
STRAND 53 160 68
COLOUR_TEXT_REGION 53 160 68 160 51
STRAND 71 160 76
COLOUR_TEXT_REGION 71 160 76 160 51
STRAND 83 160 88
COLOUR_TEXT_REGION 83 160 88 160 51
STRAND 147 160 156
COLOUR_TEXT_REGION 147 160 156 160 51
STRAND 166 160 175
COLOUR_TEXT_REGION 166 160 175 160 51
HELIX 3 160 11
COLOUR_TEXT_REGION 3 160 11 160 50
HELIX 16 160 19
COLOUR_TEXT_REGION 16 160 19 160 50
HELIX 26 160 35
COLOUR_TEXT_REGION 26 160 35 160 50
HELIX 37 160 45
COLOUR_TEXT_REGION 37 160 45 160 50
HELIX 111 160 130
COLOUR_TEXT_REGION 111 160 130 160 50
STRAND 53 165 68
COLOUR_TEXT_REGION 53 165 68 165 51
STRAND 71 165 76
COLOUR_TEXT_REGION 71 165 76 165 51
STRAND 83 165 87
COLOUR_TEXT_REGION 83 165 87 165 51
STRAND 147 165 156
COLOUR_TEXT_REGION 147 165 156 165 51
STRAND 166 165 175
COLOUR_TEXT_REGION 166 165 175 165 51
HELIX 3 165 11
COLOUR_TEXT_REGION 3 165 11 165 50
HELIX 17 165 19
COLOUR_TEXT_REGION 17 165 19 165 50
HELIX 26 165 44
COLOUR_TEXT_REGION 26 165 44 165 50
HELIX 111 165 132
COLOUR_TEXT_REGION 111 165 132 165 50
STRAND 54 166 68
COLOUR_TEXT_REGION 54 166 68 166 51
STRAND 72 166 77
COLOUR_TEXT_REGION 72 166 77 166 51
STRAND 83 166 88
COLOUR_TEXT_REGION 83 166 88 166 51
STRAND 91 166 91
COLOUR_TEXT_REGION 91 166 91 166 51
STRAND 96 166 96
COLOUR_TEXT_REGION 96 166 96 166 51
STRAND 147 166 155
COLOUR_TEXT_REGION 147 166 155 166 51
STRAND 167 166 175
COLOUR_TEXT_REGION 167 166 175 166 51
HELIX 4 166 11
COLOUR_TEXT_REGION 4 166 11 166 50
HELIX 15 166 19
COLOUR_TEXT_REGION 15 166 19 166 50
HELIX 26 166 34
COLOUR_TEXT_REGION 26 166 34 166 50
HELIX 37 166 46
COLOUR_TEXT_REGION 37 166 46 166 50
HELIX 111 166 129
COLOUR_TEXT_REGION 111 166 129 166 50