SILENT_MODE BLOCK_FILE jp_FTlNHUc.concise.blc MAX_NSEQ 162 MAX_INPUT_LEN 164 OUTPUT_FILE jp_FTlNHUc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 92 151 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 152 92 161 H SPACE SUB_CHARS 1 152 92 161 E SPACE SUB_CHARS 1 152 92 161 - SPACE STRAND 6 155 7 COLOUR_TEXT_REGION 6 155 7 155 51 STRAND 25 155 35 COLOUR_TEXT_REGION 25 155 35 155 51 STRAND 40 155 53 COLOUR_TEXT_REGION 40 155 53 155 51 STRAND 58 155 65 COLOUR_TEXT_REGION 58 155 65 155 51 STRAND 69 155 73 COLOUR_TEXT_REGION 69 155 73 155 51 STRAND 77 155 90 COLOUR_TEXT_REGION 77 155 90 155 51 HELIX 8 155 20 COLOUR_TEXT_REGION 8 155 20 155 50 STRAND 6 160 7 COLOUR_TEXT_REGION 6 160 7 160 51 STRAND 25 160 34 COLOUR_TEXT_REGION 25 160 34 160 51 STRAND 40 160 53 COLOUR_TEXT_REGION 40 160 53 160 51 STRAND 58 160 65 COLOUR_TEXT_REGION 58 160 65 160 51 STRAND 69 160 73 COLOUR_TEXT_REGION 69 160 73 160 51 STRAND 77 160 90 COLOUR_TEXT_REGION 77 160 90 160 51 HELIX 8 160 8 COLOUR_TEXT_REGION 8 160 8 160 50 HELIX 10 160 20 COLOUR_TEXT_REGION 10 160 20 160 50 STRAND 6 161 7 COLOUR_TEXT_REGION 6 161 7 161 51 STRAND 26 161 36 COLOUR_TEXT_REGION 26 161 36 161 51 STRAND 40 161 52 COLOUR_TEXT_REGION 40 161 52 161 51 STRAND 58 161 65 COLOUR_TEXT_REGION 58 161 65 161 51 STRAND 69 161 73 COLOUR_TEXT_REGION 69 161 73 161 51 STRAND 77 161 82 COLOUR_TEXT_REGION 77 161 82 161 51 STRAND 86 161 90 COLOUR_TEXT_REGION 86 161 90 161 51 HELIX 8 161 20 COLOUR_TEXT_REGION 8 161 20 161 50