SILENT_MODE
BLOCK_FILE jp_b_G0z5A.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_b_G0z5A.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 78 25   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 26 78 35 H SPACE
SUB_CHARS 1 26 78 35 E SPACE
SUB_CHARS 1 26 78 35 - SPACE
STRAND 3 29 7
COLOUR_TEXT_REGION 3 29 7 29 51
STRAND 13 29 17
COLOUR_TEXT_REGION 13 29 17 29 51
STRAND 29 29 33
COLOUR_TEXT_REGION 29 29 33 29 51
STRAND 38 29 44
COLOUR_TEXT_REGION 38 29 44 29 51
STRAND 56 29 59
COLOUR_TEXT_REGION 56 29 59 29 51
STRAND 65 29 69
COLOUR_TEXT_REGION 65 29 69 29 51
STRAND 76 29 76
COLOUR_TEXT_REGION 76 29 76 29 51
STRAND 3 34 7
COLOUR_TEXT_REGION 3 34 7 34 51
STRAND 13 34 17
COLOUR_TEXT_REGION 13 34 17 34 51
STRAND 29 34 33
COLOUR_TEXT_REGION 29 34 33 34 51
STRAND 38 34 44
COLOUR_TEXT_REGION 38 34 44 34 51
STRAND 55 34 60
COLOUR_TEXT_REGION 55 34 60 34 51
STRAND 65 34 69
COLOUR_TEXT_REGION 65 34 69 34 51
STRAND 75 34 76
COLOUR_TEXT_REGION 75 34 76 34 51
STRAND 3 35 8
COLOUR_TEXT_REGION 3 35 8 35 51
STRAND 13 35 17
COLOUR_TEXT_REGION 13 35 17 35 51
STRAND 29 35 33
COLOUR_TEXT_REGION 29 35 33 35 51
STRAND 38 35 45
COLOUR_TEXT_REGION 38 35 45 35 51
STRAND 57 35 59
COLOUR_TEXT_REGION 57 35 59 35 51
STRAND 65 35 69
COLOUR_TEXT_REGION 65 35 69 35 51
STRAND 76 35 76
COLOUR_TEXT_REGION 76 35 76 35 51
HELIX 49 35 53
COLOUR_TEXT_REGION 49 35 53 35 50
HELIX 55 35 56
COLOUR_TEXT_REGION 55 35 56 35 50