QUERY                  : HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHF : QUERY 
UniRef90_F6QW03        : HGICWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDGRTTVYGKFIDGELIEGKLATLTSTEEGRPHFELIPGSSVYHF : UniRef90_F6QW03
UniRef90_Q4QQN5        : HGVCWIYYPDGGSLVGEVNEDGDMTGDKVAYVYPDGRMALYGKFIDAEMLEGKLAILTSVDEGKPHFELVPNGPVYNF : UniRef90_Q4QQN5
UniRef90_G1KAF2        : HGICWIYHPDGGHLVGEVNDEGEMTGDKIAYVYPDKKTAYYGQFIDGEMIDAKLATLISVEGGKPQFEVLPGSPVYSF : UniRef90_G1KAF2
UniRef90_G3Q7G2        : -GECWIYYPDGGCVFGEVNEDGEMTGESVAYIYPDGHTALYGSFVDCDIIEAHLATLIASESGRPRFEITPNSPVYSF : UniRef90_G3Q7G2
UniRef90_W5K3P0        : -GICWIYYPDRGCVVGEVNDEGEMTGKGVAYVYPDGQTALYGSFVDGELIEARLATLTNQENGRPHFSVDPDSPVYSY : UniRef90_W5K3P0
UniRef90_W5MWX9        : -GVCWIYYPDGGSLVGEVNEEGEMTGNKVAYVYPDGRTALYGKFIEGELIEARLAALSAEENGRPHFEIQPDSPVYTY : UniRef90_W5MWX9
UniRef90_H3CEV8        : -GECWFYHPDGGSVFGELNENEEMTGESIAYIYPDRRTALYGSFVDGELIMARLATVTCIGNGRPRFEISPNSPVYS- : UniRef90_H3CEV8
UniRef90_H2T9P8        : -GECWLFNPDGGSIFGEVNKDGEMTGEAIAYIYPDRCTALYGSFVNGELIAARLATVIFSKSGRPHFEIVPNSPLYSY : UniRef90_H2T9P8
UniRef90_UPI000333F5F3 : ---------DGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGRFIDGEMIEGKLATLVSTEEGRPHFEVVPGGSLYHF : UniRef90_UPI000333F5F3
UniRef90_V8NZA7        : HGFCWIYYSDGGYLVGQVNEEGEMTGEKLAYVYPDGKMAYYGHFIDGEMIEARLANVILAEEEKLQFDVIPGSPVYSF : UniRef90_V8NZA7
UniRef90_H3AYA1        : HEKCFSLCQDRGSLVGEVNEEGELTGEKAAYLYPDGKTALYGKFIDAEMIETRLATLTSVSEGRPHFELAPSSHVYSF : UniRef90_H3AYA1
UniRef90_V9KF86        : -GVCWIYFLDRGCLVGQVNEDGDMTGDKIAYVYPDSSTAMLGKFVDGEMIEGRITTLKNCVDGRPQFEQVAAGPVYS- : UniRef90_V9KF86
UniRef90_S4RH73        : -GLCWIYFSDGGRLVGEVNSDGEMTGDQVAYVYPDGRTAFYGRFSDGEMISAQPAILLGLDKNKPRFEVDKGGPILH- : UniRef90_S4RH73
UniRef90_C3Y4M5        : -GFCWIYSQDGGCICGDVNDEGEMSGKNIAYIYPDMKLALIGSFVDGEMVKGKLAEVVGISQDRPQFKMVSDGGIFK- : UniRef90_C3Y4M5
UniRef90_K7FKR1        : -----------------------MTGEKIAYVYPDEKTAYYGRFIDGEMIEAKLATLISVEEGKPHFELVPGSPVYSF : UniRef90_K7FKR1
UniRef90_T1J3X3        : -GTWWFNSQDGSALIGELDSDGKLNGLNIAYLYPDRWTALVGLFEDGLMIKAKLARVSKITRNVPEFYFVPSSAEYKY : UniRef90_T1J3X3
UniRef90_B3RXC5        : -GLCWHFDEFGGSIVGLVDDDGEFTGDEIAYLYPDQETVLYGSFEEGRMVCAKAASFQGVRNNKLIIENLDTEEKYSF : UniRef90_B3RXC5
UniRef90_Q7Z0G7        : -GLCFYYFPDGGSLIGNVNASGDLSADNIAYIYPDRTTALIGSFEEGDMITAKEANVTITGEKGEEISFPTVNSI--- : UniRef90_Q7Z0G7
UniRef90_T2M8V6        : -GVCQFFLEFGGTLFGRVNKFGKLSGNNIVYAYPDNKTFLKGQFEDGELVCAYPAVYSGVGD---------------- : UniRef90_T2M8V6
UniRef90_I1G4T9        : -GFLQIFDEYGGILMGEVNRDGELTGPGIAYVYPDKRSALLGRFSNSDMVCARPALLLTSVDQTP------------- : UniRef90_I1G4T9
UniRef90_C1BUR3        : ----------GGFLLNLDHSNSEFSGDNIVYLYPDCQTAFVGTFDQSSMVSAQANEVINTRNNYPIFELL--NDVY-- : UniRef90_C1BUR3

                       : 1---------11--------21--------31--------41--------51--------61--------71------ :
OrigSeq                : HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHF : OrigSeq

Jnet                   : --EEEEE-----EEEEE-----------EEEEE----EEEEEEE-----------EEEE-----EEEEE------E-- : Jnet
jhmm                   : --EEEEE-----EEEEE-----------EEEEE----EEEEEEE----------EEEEEE----EEEEE-----EE-- : jhmm
jpssm                  : --EEEEEE----EEEEE-----------EEEEE----EEEEEEEE---HHHHH-HHEEE-----EEEEE------E-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : -BBBBBBB-BBBBBBB-B---B-B-B--BBBBBB---BBBBB-B--B-BB-BBBB-B-BB-----BB-BB-----B-- : Jnet_25
Jnet_5                 : ---B------BB-BBB-B----------BBBB------BB-B-B-----B------B---------B----------- : Jnet_5
Jnet_0                 : ----------------------------BB-B-----------------B---------------------------- : Jnet_0
Jnet Rel               : 983898616882688721567777777358985488558999861551333340130221788458885377771127 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.