SILENT_MODE BLOCK_FILE jp_hKhuKuD.concise.blc MAX_NSEQ 607 MAX_INPUT_LEN 609 OUTPUT_FILE jp_hKhuKuD.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 166 596 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 597 166 606 H SPACE SUB_CHARS 1 597 166 606 E SPACE SUB_CHARS 1 597 166 606 - SPACE STRAND 22 600 28 COLOUR_TEXT_REGION 22 600 28 600 51 STRAND 35 600 39 COLOUR_TEXT_REGION 35 600 39 600 51 STRAND 48 600 53 COLOUR_TEXT_REGION 48 600 53 600 51 STRAND 55 600 57 COLOUR_TEXT_REGION 55 600 57 600 51 STRAND 90 600 90 COLOUR_TEXT_REGION 90 600 90 600 51 STRAND 101 600 102 COLOUR_TEXT_REGION 101 600 102 600 51 STRAND 110 600 117 COLOUR_TEXT_REGION 110 600 117 600 51 STRAND 122 600 129 COLOUR_TEXT_REGION 122 600 129 600 51 STRAND 137 600 140 COLOUR_TEXT_REGION 137 600 140 600 51 HELIX 60 600 64 COLOUR_TEXT_REGION 60 600 64 600 50 HELIX 68 600 69 COLOUR_TEXT_REGION 68 600 69 600 50 HELIX 153 600 164 COLOUR_TEXT_REGION 153 600 164 600 50 STRAND 23 605 28 COLOUR_TEXT_REGION 23 605 28 605 51 STRAND 35 605 39 COLOUR_TEXT_REGION 35 605 39 605 51 STRAND 48 605 57 COLOUR_TEXT_REGION 48 605 57 605 51 STRAND 89 605 91 COLOUR_TEXT_REGION 89 605 91 605 51 STRAND 101 605 102 COLOUR_TEXT_REGION 101 605 102 605 51 STRAND 110 605 117 COLOUR_TEXT_REGION 110 605 117 605 51 STRAND 122 605 129 COLOUR_TEXT_REGION 122 605 129 605 51 STRAND 137 605 140 COLOUR_TEXT_REGION 137 605 140 605 51 HELIX 60 605 64 COLOUR_TEXT_REGION 60 605 64 605 50 HELIX 68 605 70 COLOUR_TEXT_REGION 68 605 70 605 50 HELIX 153 605 164 COLOUR_TEXT_REGION 153 605 164 605 50 STRAND 20 606 28 COLOUR_TEXT_REGION 20 606 28 606 51 STRAND 35 606 39 COLOUR_TEXT_REGION 35 606 39 606 51 STRAND 48 606 52 COLOUR_TEXT_REGION 48 606 52 606 51 STRAND 56 606 56 COLOUR_TEXT_REGION 56 606 56 606 51 STRAND 110 606 116 COLOUR_TEXT_REGION 110 606 116 606 51 STRAND 122 606 129 COLOUR_TEXT_REGION 122 606 129 606 51 STRAND 137 606 140 COLOUR_TEXT_REGION 137 606 140 606 51 HELIX 62 606 63 COLOUR_TEXT_REGION 62 606 63 606 50 HELIX 67 606 68 COLOUR_TEXT_REGION 67 606 68 606 50 HELIX 153 606 164 COLOUR_TEXT_REGION 153 606 164 606 50