SILENT_MODE BLOCK_FILE jp_SkATZvV.concise.blc MAX_NSEQ 724 MAX_INPUT_LEN 726 OUTPUT_FILE jp_SkATZvV.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 201 713 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 714 201 723 H SPACE SUB_CHARS 1 714 201 723 E SPACE SUB_CHARS 1 714 201 723 - SPACE STRAND 37 717 42 COLOUR_TEXT_REGION 37 717 42 717 51 STRAND 60 717 60 COLOUR_TEXT_REGION 60 717 60 717 51 STRAND 89 717 95 COLOUR_TEXT_REGION 89 717 95 717 51 STRAND 109 717 109 COLOUR_TEXT_REGION 109 717 109 717 51 STRAND 132 717 136 COLOUR_TEXT_REGION 132 717 136 717 51 STRAND 140 717 147 COLOUR_TEXT_REGION 140 717 147 717 51 STRAND 176 717 182 COLOUR_TEXT_REGION 176 717 182 717 51 STRAND 187 717 192 COLOUR_TEXT_REGION 187 717 192 717 51 STRAND 195 717 200 COLOUR_TEXT_REGION 195 717 200 717 51 HELIX 7 717 31 COLOUR_TEXT_REGION 7 717 31 717 50 HELIX 43 717 54 COLOUR_TEXT_REGION 43 717 54 717 50 HELIX 71 717 85 COLOUR_TEXT_REGION 71 717 85 717 50 HELIX 116 717 122 COLOUR_TEXT_REGION 116 717 122 717 50 HELIX 162 717 173 COLOUR_TEXT_REGION 162 717 173 717 50 STRAND 37 722 42 COLOUR_TEXT_REGION 37 722 42 722 51 STRAND 89 722 95 COLOUR_TEXT_REGION 89 722 95 722 51 STRAND 132 722 136 COLOUR_TEXT_REGION 132 722 136 722 51 STRAND 140 722 147 COLOUR_TEXT_REGION 140 722 147 722 51 STRAND 176 722 182 COLOUR_TEXT_REGION 176 722 182 722 51 STRAND 187 722 192 COLOUR_TEXT_REGION 187 722 192 722 51 STRAND 195 722 199 COLOUR_TEXT_REGION 195 722 199 722 51 HELIX 7 722 31 COLOUR_TEXT_REGION 7 722 31 722 50 HELIX 43 722 54 COLOUR_TEXT_REGION 43 722 54 722 50 HELIX 71 722 85 COLOUR_TEXT_REGION 71 722 85 722 50 HELIX 101 722 104 COLOUR_TEXT_REGION 101 722 104 722 50 HELIX 116 722 122 COLOUR_TEXT_REGION 116 722 122 722 50 HELIX 162 722 173 COLOUR_TEXT_REGION 162 722 173 722 50 STRAND 38 723 42 COLOUR_TEXT_REGION 38 723 42 723 51 STRAND 60 723 61 COLOUR_TEXT_REGION 60 723 61 723 51 STRAND 90 723 95 COLOUR_TEXT_REGION 90 723 95 723 51 STRAND 104 723 104 COLOUR_TEXT_REGION 104 723 104 723 51 STRAND 109 723 110 COLOUR_TEXT_REGION 109 723 110 723 51 STRAND 132 723 136 COLOUR_TEXT_REGION 132 723 136 723 51 STRAND 140 723 144 COLOUR_TEXT_REGION 140 723 144 723 51 STRAND 147 723 147 COLOUR_TEXT_REGION 147 723 147 723 51 STRAND 177 723 182 COLOUR_TEXT_REGION 177 723 182 723 51 STRAND 187 723 192 COLOUR_TEXT_REGION 187 723 192 723 51 STRAND 195 723 200 COLOUR_TEXT_REGION 195 723 200 723 51 HELIX 8 723 32 COLOUR_TEXT_REGION 8 723 32 723 50 HELIX 43 723 55 COLOUR_TEXT_REGION 43 723 55 723 50 HELIX 59 723 59 COLOUR_TEXT_REGION 59 723 59 723 50 HELIX 71 723 86 COLOUR_TEXT_REGION 71 723 86 723 50 HELIX 115 723 123 COLOUR_TEXT_REGION 115 723 123 723 50 HELIX 145 723 146 COLOUR_TEXT_REGION 145 723 146 723 50 HELIX 163 723 173 COLOUR_TEXT_REGION 163 723 173 723 50