SILENT_MODE
BLOCK_FILE jp_xMvYUNW.concise.blc
MAX_NSEQ 609
MAX_INPUT_LEN 611
OUTPUT_FILE jp_xMvYUNW.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 114 598   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 599 114 608 H SPACE
SUB_CHARS 1 599 114 608 E SPACE
SUB_CHARS 1 599 114 608 - SPACE
STRAND 6 602 11
COLOUR_TEXT_REGION 6 602 11 602 51
STRAND 27 602 31
COLOUR_TEXT_REGION 27 602 31 602 51
STRAND 53 602 57
COLOUR_TEXT_REGION 53 602 57 602 51
STRAND 78 602 82
COLOUR_TEXT_REGION 78 602 82 602 51
HELIX 13 602 22
COLOUR_TEXT_REGION 13 602 22 602 50
HELIX 38 602 48
COLOUR_TEXT_REGION 38 602 48 602 50
HELIX 62 602 74
COLOUR_TEXT_REGION 62 602 74 602 50
HELIX 94 602 103
COLOUR_TEXT_REGION 94 602 103 602 50
STRAND 6 607 11
COLOUR_TEXT_REGION 6 607 11 607 51
STRAND 27 607 31
COLOUR_TEXT_REGION 27 607 31 607 51
STRAND 53 607 57
COLOUR_TEXT_REGION 53 607 57 607 51
STRAND 79 607 82
COLOUR_TEXT_REGION 79 607 82 607 51
STRAND 89 607 90
COLOUR_TEXT_REGION 89 607 90 607 51
STRAND 111 607 111
COLOUR_TEXT_REGION 111 607 111 607 51
HELIX 13 607 22
COLOUR_TEXT_REGION 13 607 22 607 50
HELIX 38 607 48
COLOUR_TEXT_REGION 38 607 48 607 50
HELIX 62 607 73
COLOUR_TEXT_REGION 62 607 73 607 50
HELIX 94 607 103
COLOUR_TEXT_REGION 94 607 103 607 50
STRAND 6 608 11
COLOUR_TEXT_REGION 6 608 11 608 51
STRAND 28 608 31
COLOUR_TEXT_REGION 28 608 31 608 51
STRAND 53 608 57
COLOUR_TEXT_REGION 53 608 57 608 51
STRAND 78 608 83
COLOUR_TEXT_REGION 78 608 83 608 51
HELIX 15 608 22
COLOUR_TEXT_REGION 15 608 22 608 50
HELIX 38 608 48
COLOUR_TEXT_REGION 38 608 48 608 50
HELIX 63 608 74
COLOUR_TEXT_REGION 63 608 74 608 50
HELIX 94 608 103
COLOUR_TEXT_REGION 94 608 103 608 50