SILENT_MODE BLOCK_FILE jp_dZXUHmO.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_dZXUHmO.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 92 6 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 7 92 16 H SPACE SUB_CHARS 1 7 92 16 E SPACE SUB_CHARS 1 7 92 16 - SPACE STRAND 23 10 28 COLOUR_TEXT_REGION 23 10 28 10 51 STRAND 46 10 55 COLOUR_TEXT_REGION 46 10 55 10 51 STRAND 73 10 79 COLOUR_TEXT_REGION 73 10 79 10 51 HELIX 11 10 17 COLOUR_TEXT_REGION 11 10 17 10 50 HELIX 32 10 37 COLOUR_TEXT_REGION 32 10 37 10 50 HELIX 64 10 70 COLOUR_TEXT_REGION 64 10 70 10 50 HELIX 82 10 89 COLOUR_TEXT_REGION 82 10 89 10 50 STRAND 23 15 28 COLOUR_TEXT_REGION 23 15 28 15 51 STRAND 45 15 55 COLOUR_TEXT_REGION 45 15 55 15 51 STRAND 73 15 79 COLOUR_TEXT_REGION 73 15 79 15 51 HELIX 11 15 17 COLOUR_TEXT_REGION 11 15 17 15 50 HELIX 32 15 34 COLOUR_TEXT_REGION 32 15 34 15 50 HELIX 64 15 70 COLOUR_TEXT_REGION 64 15 70 15 50 HELIX 82 15 90 COLOUR_TEXT_REGION 82 15 90 15 50 STRAND 23 16 28 COLOUR_TEXT_REGION 23 16 28 16 51 STRAND 47 16 54 COLOUR_TEXT_REGION 47 16 54 16 51 STRAND 73 16 79 COLOUR_TEXT_REGION 73 16 79 16 51 HELIX 11 16 16 COLOUR_TEXT_REGION 11 16 16 16 50 HELIX 32 16 38 COLOUR_TEXT_REGION 32 16 38 16 50 HELIX 64 16 72 COLOUR_TEXT_REGION 64 16 72 16 50 HELIX 83 16 88 COLOUR_TEXT_REGION 83 16 88 16 50