QUERY           : MPAYVFSKESFLKFLEGHLEDDVVVVVSSDVTDFCKKLSESMVGEKEYCFAEFAFPADIFDADEDEIDEMMKYAIVFVEKEKLSEAGRNAIR : QUERY 
UniRef90_D2RIC1 : MPTYVFNENSFLDFIKKNVEGKVAVV-SSDVLDVDIEEMETHLGVKKHFVVKFAISADVFEVDLDKFDEILKYCVVFVESDELSEIGKKAMR : UniRef90_D2RIC1
UniRef90_F2KSY2 : MPTYVFDKEGFMKFLEKNLGEDTMVIVSSDVTDIDEASGNSYLGKRDFYMVTIGVVADVFEKDVDEFDEKPKYLVVFTSSDELT-------- : UniRef90_F2KSY2

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91 :
OrigSeq         : MPAYVFSKESFLKFLEGHLEDDVVVVVSSDVTDFCKKLSESMVGEKEYCFAEFAFPADIFDADEDEIDEMMKYAIVFVEKEKLSEAGRNAIR : OrigSeq

Jnet            : ----------HHHHHHH-----EEEEEE---HHHHHH--------EEEEEEEEEE--------HHHHHHH--EEEEEEE--HHHHHHHH--- : Jnet
jhmm            : ----------HHHHHHH-----EEEEEE---HHH----------EEEEEEEEEEE--------HHHHHHH--EEEEEEE--HHHHHHHHH-- : jhmm
jpssm           : ----------HHHHHH------EEEEEE---HHHHHHH--------EEEEEEEE---------HHHHHHHHHEEEEEEE---HHHHHH---- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -B-BBB----BB-BB---B---BBBBBBB-BB-BB---B--BBB-B-BBBB-BBB-BBBB---B--B--BB-BBBBBB----B--BB----- : Jnet_25
Jnet_5          : ----------B---B-------BBBBB---B-----------------B-B-B-B---B-------B------BBBB-----B--------- : Jnet_5
Jnet_0          : ------------------------BB------------------------B----------------------BBB---------------- : Jnet_0
Jnet Rel        : 99842465527887751688844788735711562111141123010677888507764302178788632213566504316666543289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.