SILENT_MODE
BLOCK_FILE jp_LfBafs1.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_LfBafs1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 6   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 7 124 16 H SPACE
SUB_CHARS 1 7 124 16 E SPACE
SUB_CHARS 1 7 124 16 - SPACE
HELIX 4 10 17
COLOUR_TEXT_REGION 4 10 17 10 50
HELIX 34 10 48
COLOUR_TEXT_REGION 34 10 48 10 50
HELIX 59 10 67
COLOUR_TEXT_REGION 59 10 67 10 50
HELIX 69 10 86
COLOUR_TEXT_REGION 69 10 86 10 50
HELIX 92 10 122
COLOUR_TEXT_REGION 92 10 122 10 50
HELIX 5 15 17
COLOUR_TEXT_REGION 5 15 17 15 50
HELIX 33 15 48
COLOUR_TEXT_REGION 33 15 48 15 50
HELIX 62 15 66
COLOUR_TEXT_REGION 62 15 66 15 50
HELIX 69 15 85
COLOUR_TEXT_REGION 69 15 85 15 50
HELIX 92 15 122
COLOUR_TEXT_REGION 92 15 122 15 50
HELIX 4 16 17
COLOUR_TEXT_REGION 4 16 17 16 50
HELIX 34 16 48
COLOUR_TEXT_REGION 34 16 48 16 50
HELIX 57 16 87
COLOUR_TEXT_REGION 57 16 87 16 50
HELIX 92 16 122
COLOUR_TEXT_REGION 92 16 122 16 50