QUERY           : LTLDNRLAEALPLWRNLARTDRAPRRNIDLADWKADWRELIAALDRFSRSHGYRQPFAAQGHAALENAWAWGQAAENASTLLLKAIDRGLAGAELRSIYLETAALWLDYSRLLGAARDSLREQG : QUERY 
UniRef90_D0J2M2 : ----GQLAAACAEWAKISLTGLQPRRNLNLSDKKADWKEALSALKRFANSDSYKAHQNFQAHAALENYWKWKEVGEQARWLLIYGIDLGLCGDVLRPIYQEVVALWIDAASVAEHARASMAQE- : UniRef90_D0J2M2
UniRef90_T5L9A8 : ----NLLLDVLPRWRALAKDPGVPRRMLRLPDWQADWNAGMALLARHARNGGDPAEEPLQGHAALEHAYGWEAVAQTGSNLLLKGIDHGFAPTALQQMHADVAELWLEHARLLAIARNSLQQQG : UniRef90_T5L9A8

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121- :
OrigSeq         : LTLDNRLAEALPLWRNLARTDRAPRRNIDLADWKADWRELIAALDRFSRSHGYRQPFAAQGHAALENAWAWGQAAENASTLLLKAIDRGLAGAELRSIYLETAALWLDYSRLLGAARDSLREQG : OrigSeq

Jnet            : ---HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm            : ----HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm           : ---HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B---BB-BBB-BB-BB-----B---B-B--B-B-B--BB-BB--BB----B-----B-BBBBB--BB-B--BB--B-BBBBBBB---BB---B--BB--BBBBBB-BB-BB-BB---B---- : Jnet_25
Jnet_5          : ------B--BB--B-------------B--------B--BB--B----------------B--BB------------B--BBB-BB--------B--B---BB-BBB--B-B---B-------- : Jnet_5
Jnet_0          : ------B---B--------------------------------B---------------------------------B--BBB-----------B----------B------------------ : Jnet_0
Jnet Rel        : 9911899999999997515777654567777621668999999998624778776422014999871189999999861799998115886189999999999998848999999999987289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.