SILENT_MODE
BLOCK_FILE jp_yvl3SiF.concise.blc
MAX_NSEQ 159
MAX_INPUT_LEN 161
OUTPUT_FILE jp_yvl3SiF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 84 148   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 149 84 158 H SPACE
SUB_CHARS 1 149 84 158 E SPACE
SUB_CHARS 1 149 84 158 - SPACE
STRAND 6 152 16
COLOUR_TEXT_REGION 6 152 16 152 51
STRAND 21 152 28
COLOUR_TEXT_REGION 21 152 28 152 51
STRAND 33 152 41
COLOUR_TEXT_REGION 33 152 41 152 51
HELIX 51 152 80
COLOUR_TEXT_REGION 51 152 80 152 50
STRAND 5 157 16
COLOUR_TEXT_REGION 5 157 16 157 51
STRAND 20 157 28
COLOUR_TEXT_REGION 20 157 28 157 51
STRAND 33 157 41
COLOUR_TEXT_REGION 33 157 41 157 51
HELIX 51 157 80
COLOUR_TEXT_REGION 51 157 80 157 50
STRAND 6 158 16
COLOUR_TEXT_REGION 6 158 16 158 51
STRAND 21 158 28
COLOUR_TEXT_REGION 21 158 28 158 51
STRAND 33 158 40
COLOUR_TEXT_REGION 33 158 40 158 51
HELIX 50 158 80
COLOUR_TEXT_REGION 50 158 80 158 50