SILENT_MODE
BLOCK_FILE jp_SHzmk09.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_SHzmk09.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 83 21   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 22 83 31 H SPACE
SUB_CHARS 1 22 83 31 E SPACE
SUB_CHARS 1 22 83 31 - SPACE
STRAND 21 25 26
COLOUR_TEXT_REGION 21 25 26 25 51
STRAND 42 25 43
COLOUR_TEXT_REGION 42 25 43 25 51
STRAND 76 25 81
COLOUR_TEXT_REGION 76 25 81 25 51
HELIX 5 25 17
COLOUR_TEXT_REGION 5 25 17 25 50
HELIX 52 25 69
COLOUR_TEXT_REGION 52 25 69 25 50
STRAND 21 30 26
COLOUR_TEXT_REGION 21 30 26 30 51
STRAND 42 30 43
COLOUR_TEXT_REGION 42 30 43 30 51
STRAND 76 30 81
COLOUR_TEXT_REGION 76 30 81 30 51
HELIX 5 30 17
COLOUR_TEXT_REGION 5 30 17 30 50
HELIX 52 30 70
COLOUR_TEXT_REGION 52 30 70 30 50
STRAND 21 31 26
COLOUR_TEXT_REGION 21 31 26 31 51
STRAND 29 31 29
COLOUR_TEXT_REGION 29 31 29 31 51
STRAND 41 31 43
COLOUR_TEXT_REGION 41 31 43 31 51
STRAND 76 31 81
COLOUR_TEXT_REGION 76 31 81 31 51
HELIX 6 31 17
COLOUR_TEXT_REGION 6 31 17 31 50
HELIX 55 31 68
COLOUR_TEXT_REGION 55 31 68 31 50