QUERY                  : MKLSPKAAIEVCNEAAKKGLWILGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM : QUERY 
UniRef90_B4F069        : MYLSPKAAIEVCQEATKRNLWISGIDGGHWLNPGFRPDGSASWSGKTKLFNENKISENNQLAIENIQEDAAAGYTAFIVTLRM : UniRef90_B4F069
UniRef90_UPI0004633483 : MKLSPKAAIEVCQEAAKRNLWISGIDGGHWFNPGFRPDGDVSWTYNKPNDYKSKLTENNKLAIENIKDDEAAGYTAFLVTI-- : UniRef90_UPI0004633483
UniRef90_B1K9Z0        : MKLTTEAAIDVCERAAQQGLVVARIEGGIWRNPGFEARVDCIWDGADPPVDLDAAEQNNQRAAEFIRSE-SPPHDVFVVT--- : UniRef90_B1K9Z0
UniRef90_H9T8G5        : MKLSADAAIAVCERAGQHGLVVARIEGGIWHFPGFEARLDCIWDGIDPPVDVGVAEQNNLAAAEFVRSESQE-HDVFVVT--- : UniRef90_H9T8G5
UniRef90_UPI00036ED833 : MKLTPNAAQEVCNKALEHGLVVVRIEGGIWHNPGFEARLDCIWDGVDPPVSETEAAINNARALEMIREEIE-VHDVFIIT--- : UniRef90_UPI00036ED833
UniRef90_Q6D5P4        : MKLSPKAAIEVCQEATKRNLPIGMIEGGHWLNPGFQPDGNTRWDGFDKLTDKSEIKKSNDNAIENINDDSSKGYNAFIITI-- : UniRef90_Q6D5P4
UniRef90_D8MV97        : MKFTPKGAKELCEEATKRNIFIGRIECGNWSVSGFCPDGNMTWDSKSDLVAAGKIKENNDLAIENINEDASEGYNAFLFTL-- : UniRef90_D8MV97
UniRef90_S3CE61        : MKLSSSAAIDVCKECTRREMYVWRIEGGIWHNPGFEARIDCIWDFNPKSNSNPSLEYNNRLAEEFVKEEM-DSYDVFIVTI-- : UniRef90_S3CE61
UniRef90_G8Q464        : MRLSPTAAVEVCMTAAAHGRVVARIEGGIWHSPGFEARLDCIWDGADLPISESNAHLNNLVAGDFIREEM-DCHTAFILT--- : UniRef90_G8Q464
UniRef90_V6IK39        : IRLTPDAALTLCDLAIENDCYIDWYECGIWHGDKQGYEGHDVWGKILSEISNSAIQENNLEAKENIRCDIEDGYNVFELCIK- : UniRef90_V6IK39
UniRef90_A9API5        : MKLSAGAAIEICERAAEQGLVVSRVEGGIWHFPGFEARLDCIWDGADPPVDSTAANQNNLAAADFIRAE-SNVHDVFVVT--- : UniRef90_A9API5
UniRef90_B7LIF7        : ------------QRKKAYGFWMVGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM : UniRef90_B7LIF7
UniRef90_Q02S28        : MWLTTKATLEVVSLATKKGLAISKIEGFIWHVGRFEARLDAIFEGLVNPVKVDDVNNNNTRAKESTEEDASLGHDAFIVTI-- : UniRef90_Q02S28
UniRef90_UPI000367C609 : -YLTAPAALEVCYIAADFNFYIKHYEAGILH----EIDGDMSYAGIDKVETAEDAQNNNRIALDLIKADIASGHTAFCVQLK- : UniRef90_UPI000367C609
UniRef90_UPI000225E302 : MKLTKDAAAVTIDQCTQKDIAVSIIEGGIWREPGFEARLDAIWDFDTKPE-LAAIESNNSKALAFIRNKLPTEIDTVIIS--- : UniRef90_UPI000225E302
UniRef90_UPI00029AB575 : MKLTPEAAIEVCKRSVELNFIVSRIEGGVWHNPGFEMRLDCIWDRDDN----------------------------------- : UniRef90_UPI00029AB575
UniRef90_UPI0004744F43 : LKLTPAAARVVCTQAASYGLVIVRVEGGIWHSPGFEARIDCIWDGI------------------------------------- : UniRef90_UPI0004744F43

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81- :
OrigSeq                : MKLSPKAAIEVCNEAAKKGLWILGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM : OrigSeq

Jnet                   : ----HHHHHHHHHHHHH---EEEEEE---------------EE--------HHHHHHHHHHHHHHHHHH------EEEEEE-- : Jnet
jhmm                   : ----HHHHHHHHHHHHH---EEEEEE---------------EE--------HHHHHHHHHHHHHHHHHHH-----EEEEEE-- : jhmm
jpssm                  : -----HHHHHHHHHHHH---EEEEEE--E-----------EEE-----------HHHHHHHHHHHHHH-------EEEEEE-- : jpssm

Lupas 14               : ----------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --B---BB--BB--BB---BBBBBBBBBBBB---B-B-BBBBB--B--------B--BB--BB-BB---B---BBBBBBBB-- : Jnet_25
Jnet_5                 : -------B--BB--B----BBB--B-BB----------B-B-------------B------B---B---------BBBBBB-- : Jnet_5
Jnet_0                 : -------B---B----------------------------------------------------------------BBB---- : Jnet_0
Jnet Rel               : 99973248999999874586389860433256665102541433677776612326658999999874407888458998528 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.