SILENT_MODE
BLOCK_FILE jp_Raj5Pz0.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Raj5Pz0.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 93 22   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 23 93 32 H SPACE
SUB_CHARS 1 23 93 32 E SPACE
SUB_CHARS 1 23 93 32 - SPACE
STRAND 31 26 36
COLOUR_TEXT_REGION 31 26 36 26 51
STRAND 54 26 57
COLOUR_TEXT_REGION 54 26 57 26 51
STRAND 62 26 66
COLOUR_TEXT_REGION 62 26 66 26 51
STRAND 72 26 75
COLOUR_TEXT_REGION 72 26 75 26 51
HELIX 4 26 11
COLOUR_TEXT_REGION 4 26 11 26 50
HELIX 18 26 26
COLOUR_TEXT_REGION 18 26 26 26 50
STRAND 30 31 37
COLOUR_TEXT_REGION 30 31 37 31 51
STRAND 54 31 56
COLOUR_TEXT_REGION 54 31 56 31 51
STRAND 62 31 66
COLOUR_TEXT_REGION 62 31 66 31 51
STRAND 72 31 75
COLOUR_TEXT_REGION 72 31 75 31 51
HELIX 4 31 11
COLOUR_TEXT_REGION 4 31 11 31 50
HELIX 18 31 26
COLOUR_TEXT_REGION 18 31 26 31 50
STRAND 32 32 35
COLOUR_TEXT_REGION 32 32 35 32 51
STRAND 54 32 57
COLOUR_TEXT_REGION 54 32 57 32 51
STRAND 62 32 66
COLOUR_TEXT_REGION 62 32 66 32 51
STRAND 72 32 75
COLOUR_TEXT_REGION 72 32 75 32 51
STRAND 90 32 91
COLOUR_TEXT_REGION 90 32 91 32 51
HELIX 4 32 12
COLOUR_TEXT_REGION 4 32 12 32 50
HELIX 18 32 26
COLOUR_TEXT_REGION 18 32 26 32 50