QUERY                  : LKIDQKIRGQMPERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWGN : QUERY 
UniRef90_B4F070        : IKIEGKIQDQMGGRGWSEKDIQDVIAKGAKGKSVDQRRPKNTD-DGLGRNDPATVYGEPGKYVVVNDRTGEVAQISNKNDPRWIDDSRIQW-- : UniRef90_B4F070
UniRef90_UPI00040123C5 : LKFDEKIKDQMNGRGWTEQDAKDTAAKGPKGKSFDKRSPKKTPPDHLGRNDTATVYGKQGEYVVVNDRTGEVVQVSDKTDPQWIDDSRIQW-- : UniRef90_UPI00040123C5
UniRef90_U7DTT9        : ITIDGKIGGQLEARGWTQQEVQDVIDEGPVGTTADNRSASKTP-DGLARSDPASVYGSKNGYVVVNDRTGEVVQISGKNDPGWIPDSRIKW-- : UniRef90_U7DTT9
UniRef90_Q6D5P5        : LKLDDKIREQLGNRGWTEQDVRDTVSKGAKGSAEDKCSPKKTPPDFLGRNDPASVYGEFGKYIVVNDRTGEVVQFSDKSDPEWVDDSRINWGD : UniRef90_Q6D5P5
UniRef90_V6IQV1        : -TIDPKIENQMSTRGWSNKDIADVMKKGPVGYTIDKRRASKTP-DNLPRNDTATVYGSKNGYVVVNDRTKEVVQISDKTDKNWIPDSRIQW-- : UniRef90_V6IQV1
UniRef90_R9ZSA2        : VVIDDKIREQIPIRGWTEVEIRDVIGKGATGSSSDKRRPNKT-IDGLGRNDSATVYGSPNGYIVVNDRTGEIIQIADRNDSAWAVDGRIIWRN : UniRef90_R9ZSA2
UniRef90_UPI00036A2F67 : ISIDSKIGSQINDRGWTVSDIKDVIAAGPVGSTTDNRSGAKAP-DGVPRSDTASVYGSKNGYVVVNDRTGEVVQVSGKNDPGWIPDSRIKW-- : UniRef90_UPI00036A2F67
UniRef90_UPI00030A548D : --VEPKIAQQMGKRGWTTDSLEGVIANPKTVVTKDTRFD---PASGTRLNDPATGYVKDGSYVVRNDRTGTIVQVSDKNDKNWVA-------- : UniRef90_UPI00030A548D
UniRef90_F2K387        : -QFEKKIENQMGKRGWDKDSVNSTIDNPKTVSTRDTRWNS----DGTRRDDPATAYREDDHYVVRNNNDGTIVQISNRNKADW---------- : UniRef90_F2K387
UniRef90_K7WD50        : LNIGRKIKQQMSKRGWTEEMLELVYLNPKTEKTRDKRYNM----DGTRKDDPATYYRSDGAYIVCNDITGDVVQVSDINDPNWIE-------- : UniRef90_K7WD50
UniRef90_W7CZB8        : -KKANKLANQMKSRGWTQASIKKLINKPYT--------TRKSTNKATG-NSATVYYDKKGTYVIVDNRTKEIVQVSNRYDKKWQPDPSII--- : UniRef90_W7CZB8
UniRef90_E3ZWG6        : VKSTKKVNNQMKKRGWSEESVKDVVDHPH--------STRKSVNKATG-NGATVFYDKDGSYVIIDDKTKEIVQISDKFDKNWVPDAGI---- : UniRef90_E3ZWG6
UniRef90_M1MKY3        : -KSTQKLSNQMTQRGWTESTVRDIVSKPYT----TRASINKATG-----NSATVYYNKAGGYVIIDDITKSVVQVSDNINPSWIPDPSII--- : UniRef90_M1MKY3
UniRef90_UPI0002FD476F : -------KNQIVKRGWSNESIANTINNPVKLGSSVNKYTG---------NPVTLYYIDDIHYVAVDNITNKAIQVADMFDPNWVAD------- : UniRef90_UPI0002FD476F
UniRef90_UPI0004629BB2 : -------SSQVLDRGWNNQKIADTINNPVKTTSGYNKYTNSSV---------TNYYIDEIHYVAVDDSTKKVIQISDLNNPNW---------- : UniRef90_UPI0004629BB2
UniRef90_W6W515        : IKNLEKLERQMEQRGWSYKQIEEAVEKGK----QHPATNFKTGGPATRYEHPTT-----GRSVIIDDTTKGIIQVGG---------------- : UniRef90_W6W515
UniRef90_UPI0003690D69 : -NLSNKIVRQMASRGWTTQVILETFQNGKAYNVVNKATG-----------GAATEYVNPGKFVVVDNATKQVLQVSG---PGFSPNHLIQ--- : UniRef90_UPI0003690D69
UniRef90_V7I745        : -KITSKISSQMAKRGWTNQLVKETILKNVGRKAFNRATG----------NAATAYFTSSGAYVVIDNITKE---------------------- : UniRef90_V7I745

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91- :
OrigSeq                : LKIDQKIRGQMPERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWGN : OrigSeq

Jnet                   : ---HHHHHHHH------HHHHHHHHH----EEEEEE-----------------EEEE----EEEEE-----EEEE------------------ : Jnet
jhmm                   : ---HHHHHHHH------HHHHHHHHH---EEEEEEEE----------------EEE-----EEEEE-----EEEE------------------ : jhmm
jpssm                  : ---HHHHHHHHH-----HHHHHHHHH-----EEEE------------------EEEE----EEEEE-----EEEE--------------EE-- : jpssm

Lupas 14               : --------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ------B---B----B----B--BB-----------B----B---BB----BBBBB---B-BBBBBB----BBBBB------BB----B---- : Jnet_25
Jnet_5                 : ------B-------------B--BB--------------------------BB--B-----BBBB------BB-B------------------ : Jnet_5
Jnet_0                 : --------------------B------------------------------------------BB-------B-------------------- : Jnet_0
Jnet Rel               : 997389998750488747899988852770216742077776676667777635882478558986488716874367776667777630268 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.