SILENT_MODE BLOCK_FILE jp_tWxr0SE.concise.blc MAX_NSEQ 401 MAX_INPUT_LEN 403 OUTPUT_FILE jp_tWxr0SE.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 79 390 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 391 79 400 H SPACE SUB_CHARS 1 391 79 400 E SPACE SUB_CHARS 1 391 79 400 - SPACE STRAND 6 394 7 COLOUR_TEXT_REGION 6 394 7 394 51 STRAND 74 394 75 COLOUR_TEXT_REGION 74 394 75 394 51 HELIX 13 394 19 COLOUR_TEXT_REGION 13 394 19 394 50 HELIX 22 394 29 COLOUR_TEXT_REGION 22 394 29 394 50 HELIX 38 394 47 COLOUR_TEXT_REGION 38 394 47 394 50 HELIX 50 394 56 COLOUR_TEXT_REGION 50 394 56 394 50 HELIX 61 394 70 COLOUR_TEXT_REGION 61 394 70 394 50 STRAND 6 399 7 COLOUR_TEXT_REGION 6 399 7 399 51 STRAND 74 399 76 COLOUR_TEXT_REGION 74 399 76 399 51 HELIX 13 399 18 COLOUR_TEXT_REGION 13 399 18 399 50 HELIX 21 399 29 COLOUR_TEXT_REGION 21 399 29 399 50 HELIX 38 399 47 COLOUR_TEXT_REGION 38 399 47 399 50 HELIX 50 399 56 COLOUR_TEXT_REGION 50 399 56 399 50 HELIX 61 399 70 COLOUR_TEXT_REGION 61 399 70 399 50 STRAND 6 400 7 COLOUR_TEXT_REGION 6 400 7 400 51 HELIX 13 400 19 COLOUR_TEXT_REGION 13 400 19 400 50 HELIX 22 400 29 COLOUR_TEXT_REGION 22 400 29 400 50 HELIX 38 400 46 COLOUR_TEXT_REGION 38 400 46 400 50 HELIX 50 400 56 COLOUR_TEXT_REGION 50 400 56 400 50 HELIX 61 400 70 COLOUR_TEXT_REGION 61 400 70 400 50