SILENT_MODE
BLOCK_FILE jp_eyG9LJS.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_eyG9LJS.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 65 10   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 11 65 20 H SPACE
SUB_CHARS 1 11 65 20 E SPACE
SUB_CHARS 1 11 65 20 - SPACE
STRAND 7 14 9
COLOUR_TEXT_REGION 7 14 9 14 51
STRAND 15 14 20
COLOUR_TEXT_REGION 15 14 20 14 51
STRAND 51 14 55
COLOUR_TEXT_REGION 51 14 55 14 51
STRAND 59 14 63
COLOUR_TEXT_REGION 59 14 63 14 51
HELIX 26 14 42
COLOUR_TEXT_REGION 26 14 42 14 50
STRAND 7 19 8
COLOUR_TEXT_REGION 7 19 8 19 51
STRAND 15 19 19
COLOUR_TEXT_REGION 15 19 19 19 51
STRAND 52 19 54
COLOUR_TEXT_REGION 52 19 54 19 51
STRAND 59 19 63
COLOUR_TEXT_REGION 59 19 63 19 51
HELIX 27 19 42
COLOUR_TEXT_REGION 27 19 42 19 50
STRAND 8 20 9
COLOUR_TEXT_REGION 8 20 9 20 51
STRAND 15 20 20
COLOUR_TEXT_REGION 15 20 20 20 51
STRAND 49 20 55
COLOUR_TEXT_REGION 49 20 55 20 51
STRAND 60 20 63
COLOUR_TEXT_REGION 60 20 63 20 51
HELIX 26 20 42
COLOUR_TEXT_REGION 26 20 42 20 50