QUERY           : DWKQPELESDEHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAKHWNLAECTFEASGEGVIIKKR : QUERY 
UniRef90_F8SPF1 : DWKQPELESDGDGKTLRLTIPDGLTGEQKSQWLATIKAVVQSAKYWNISECSFESYEQGVLIRER : UniRef90_F8SPF1
UniRef90_G3G882 : NWKQPELESDGDGKTLLLTAPDGLTPEQRTQWNATIKALVQSAKYWNIAECSVEDNERGIVIKER : UniRef90_G3G882
UniRef90_G3G889 : EWKPPELESDSTGKSLTLTIPGGLTTEQRSQWTSTIEALVQSAKYWNIAECSVEKTGHEIILRER : UniRef90_G3G889
UniRef90_A6MU27 : DWTQPVMKENGGEKSLSLFPPVGLTKVQTDQWRKTIEAVCESSKYWNLSECQIMNSDDCLILKGR : UniRef90_A6MU27
UniRef90_B3FRL2 : EWKLPELESDSTGKSLKLFIPDNLTQEQKSQWIATIEALVQSARYWNIAECSVEKTSQGITLKER : UniRef90_B3FRL2
UniRef90_A6H381 : -------------------LPEGLSGEQKSQWLLTIKAVVQSAKHWNLAECTFEASGEGVIIKKR : UniRef90_A6H381

                : 1---------11--------21--------31--------41--------51--------61--- :
OrigSeq         : DWKQPELESDEHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAKHWNLAECTFEASGEGVIIKKR : OrigSeq

Jnet            : ------EEE-----EEEEEE-----HHHHHHHHHHHHHHHHH--------EEEEE---EEEEE-- : Jnet
jhmm            : ------EE------EEEEE-------HHHHHHHHHHHHHHHH---------EEE----EEEEE-- : jhmm
jpssm           : -------EE-----EEEEEE-----HHHHHHHHHHHHHHHHH------EEEEEEE----EEEE-- : jpssm

Lupas 14        : ----------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------- : Lupas 28

Jnet_25         : -B----B-------BB-BBBB--B---B---B--BB-BBB-BB-BB-BB-B-B-----BBBB--- : Jnet_25
Jnet_5          : ---------------B-B-------------B---B--BB----------B----------B--- : Jnet_5
Jnet_0          : -----------------------------------B--B-------------------------- : Jnet_0
Jnet Rel        : 99887512036884588880478741668999999999987525577542177604871688469 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.