SILENT_MODE BLOCK_FILE jp_1b_RWR1.concise.blc MAX_NSEQ 127 MAX_INPUT_LEN 129 OUTPUT_FILE jp_1b_RWR1.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 89 116 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 117 89 126 H SPACE SUB_CHARS 1 117 89 126 E SPACE SUB_CHARS 1 117 89 126 - SPACE STRAND 15 120 19 COLOUR_TEXT_REGION 15 120 19 120 51 STRAND 24 120 31 COLOUR_TEXT_REGION 24 120 31 120 51 STRAND 37 120 43 COLOUR_TEXT_REGION 37 120 43 120 51 STRAND 47 120 51 COLOUR_TEXT_REGION 47 120 51 120 51 HELIX 4 120 13 COLOUR_TEXT_REGION 4 120 13 120 50 HELIX 58 120 69 COLOUR_TEXT_REGION 58 120 69 120 50 HELIX 74 120 87 COLOUR_TEXT_REGION 74 120 87 120 50 STRAND 15 125 19 COLOUR_TEXT_REGION 15 125 19 125 51 STRAND 24 125 31 COLOUR_TEXT_REGION 24 125 31 125 51 STRAND 37 125 43 COLOUR_TEXT_REGION 37 125 43 125 51 STRAND 47 125 50 COLOUR_TEXT_REGION 47 125 50 125 51 HELIX 4 125 13 COLOUR_TEXT_REGION 4 125 13 125 50 HELIX 61 125 70 COLOUR_TEXT_REGION 61 125 70 125 50 HELIX 74 125 87 COLOUR_TEXT_REGION 74 125 87 125 50 STRAND 15 126 18 COLOUR_TEXT_REGION 15 126 18 126 51 STRAND 25 126 31 COLOUR_TEXT_REGION 25 126 31 126 51 STRAND 37 126 42 COLOUR_TEXT_REGION 37 126 42 126 51 STRAND 47 126 51 COLOUR_TEXT_REGION 47 126 51 126 51 HELIX 4 126 13 COLOUR_TEXT_REGION 4 126 13 126 50 HELIX 58 126 69 COLOUR_TEXT_REGION 58 126 69 126 50 HELIX 75 126 87 COLOUR_TEXT_REGION 75 126 87 126 50