SILENT_MODE
BLOCK_FILE jp_awWiXRq.concise.blc
MAX_NSEQ 397
MAX_INPUT_LEN 399
OUTPUT_FILE jp_awWiXRq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 128 386   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 387 128 396 H SPACE
SUB_CHARS 1 387 128 396 E SPACE
SUB_CHARS 1 387 128 396 - SPACE
HELIX 4 390 34
COLOUR_TEXT_REGION 4 390 34 390 50
HELIX 38 390 68
COLOUR_TEXT_REGION 38 390 68 390 50
HELIX 74 390 83
COLOUR_TEXT_REGION 74 390 83 390 50
HELIX 88 390 126
COLOUR_TEXT_REGION 88 390 126 390 50
HELIX 3 395 34
COLOUR_TEXT_REGION 3 395 34 395 50
HELIX 38 395 68
COLOUR_TEXT_REGION 38 395 68 395 50
HELIX 74 395 83
COLOUR_TEXT_REGION 74 395 83 395 50
HELIX 88 395 126
COLOUR_TEXT_REGION 88 395 126 395 50
HELIX 4 396 34
COLOUR_TEXT_REGION 4 396 34 396 50
HELIX 37 396 67
COLOUR_TEXT_REGION 37 396 67 396 50
HELIX 75 396 82
COLOUR_TEXT_REGION 75 396 82 396 50
HELIX 87 396 126
COLOUR_TEXT_REGION 87 396 126 396 50