QUERY               : HHHHNSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGC : QUERY 
UniRef90_J7FAC6     : EHPSNSSLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGT-QDPIRFCIENEVCVVCGCWLNNGC : UniRef90_J7FAC6
UniRef90_A0A023YA54 : EFASNSSVLSLVTFTVDPKKAYMDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPESNADQETYGGASVCLYCRAHIEHPDVSGVCKFKGRFVQIPSQCTRDPVGFCLTNDPCPLCQYWKGYGC : UniRef90_A0A023YA54
UniRef90_K4JZB7     : ELAVNSPLLTMCAFAVDPAKTYLDAVKRGAKPVGNCIKMLANGSGTGQAVTTGVEANTNQDSYGGASVCLYCRAHVEHPSMDGYCKLKGRYVQVPMGTI-DPIRFVLENEACKVCQCWLNNGC : UniRef90_K4JZB7
UniRef90_P0C6V6     : EQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVCGCWLSNGC : UniRef90_P0C6V6
UniRef90_P0C6U2     : EFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIGT-NDPIRFCLENTVCKVCGCWLNHGC : UniRef90_P0C6U2
UniRef90_P0C6U6     : ELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWLGHGC : UniRef90_P0C6U6
UniRef90_P0C6F7     : EFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGC : UniRef90_P0C6F7
UniRef90_X2EXX4     : EYQQNASLLTYLAFAVDPKTAYLKHLADGGSPIQGCIQMIAT-MGPGFAVTTKPQPNEHQYSYGGASICLYCRAHIPHPGVDGRCPYKGRFVHIDKD--KEPVSFALTHEPCSSCQRWVNYDC : UniRef90_X2EXX4
UniRef90_P0C6U4     : EYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVCGFWRDGSC : UniRef90_P0C6U4
UniRef90_A3EXH3     : EVASNSSILSLCAFSVDPEATYKEYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDANIEQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPQVGVNDPIGFCIRNVVCAVCNMWQGYGC : UniRef90_A3EXH3
UniRef90_B2BW32     : ESVENCGILSLCSFALDAKECYLEYIKEGGAPLSNCVKMLTLHTGSGAAVTVKPAPTPEQDSFGGASVCLYCRAHISHPGVYGVCQFKGKFVQIPVE-EKDPVGFCLRNKICTVCQMWIGFGC : UniRef90_B2BW32
UniRef90_I1YZH5     : ------GILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTSDQDSYGGASVCLYCRAHIAHPGLDGRCQFKGSFVQIPT-MEKDPVGFCLRNKVCTVCQCWFGYGC : UniRef90_I1YZH5
UniRef90_H9BR16     : EYQENNSLLTYLAFAVNPREAYLAHISNGGKPIQGAVRVIAPQ-GEGFAVTTKPQPNAMQHAYGGASICLYCRAHVTHPSMDGRCNYKGRFVHIDKDL--EPTQFALTHEPCTACHRWVNHDC : UniRef90_H9BR16
UniRef90_H9BR24     : EYQQNASLLTYLAFAADPKDAYLKHVQAGGKPLMGAVKMVAP-IGEGFAVTTKPQPNANQHSYGGASICVYCRAHVPHNTVNGQCLYKGRFVQIDKDL--DPFKFLLEHQPCTSCQRWQSHDC : UniRef90_H9BR24
UniRef90_H8PHI3     : ------------------------------------------------AISITPVQTPGHCTYAGISVCRKCKSKEQH-----TCLYADKFVQIPSTTDNPP---CLHNKLCSLCN------- : UniRef90_H8PHI3

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121 :
OrigSeq             : HHHHNSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGC : OrigSeq

Jnet                : -------HHHHH-----HHHHHHHHHHH----HHHHEEEEE-----EEEEEEE-------------EEEEEE--E--------EEE---EEEEE--------EEEEEE---------E----- : Jnet
jhmm                : -------HHHHH-----HHHHHHHHHHH----HHHHEEEEE-----EEEEEEE-------------EEEEE------------EEE----EEEE--------EEEEEE----H---------- : jhmm
jpssm               : -------HHHHH-----HHHHHHHHHHH---HHH-HEEEEE-----EEEEEEE------------EEEEEEE-EE-------EEE----EEEEE--------EEEEEE--------EE----- : jpssm

Lupas 14            : --------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : --------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : --------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : ----BBBBBBBBBBBB-B--BBB-BB--BB-BB-BBBBBBB-----BBBBBB-B--------BBBBBBBBBBBB-B-B--B-B-B-B-B-BB-BB--B---BB-BBB-B-BB-BB-BB----B : Jnet_25
Jnet_5              : -------BBBBBBBB-----BB--BB------B--BB-BBB-----B-BB-------------BBBBBBB-B-B----------B------B-B--------B-BBB----B-BB--B----- : Jnet_5
Jnet_0              : -------B-B----B------B--------------B-----------B----------------B-BB--B------------------------------------------B-------- : Jnet_0
Jnet Rel            : 999887523111057756899999986232332110256625888617888615777766777751688881011367777405523640888537655553146774377512321047899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.