SILENT_MODE
BLOCK_FILE jp_roJaNF5.concise.blc
MAX_NSEQ 63
MAX_INPUT_LEN 65
OUTPUT_FILE jp_roJaNF5.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 53 52   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 53 53 62 H SPACE
SUB_CHARS 1 53 53 62 E SPACE
SUB_CHARS 1 53 53 62 - SPACE
STRAND 41 56 48
COLOUR_TEXT_REGION 41 56 48 56 51
HELIX 3 56 6
COLOUR_TEXT_REGION 3 56 6 56 50
HELIX 8 56 36
COLOUR_TEXT_REGION 8 56 36 56 50
HELIX 40 56 40
COLOUR_TEXT_REGION 40 56 40 56 50
STRAND 41 61 48
COLOUR_TEXT_REGION 41 61 48 61 51
HELIX 2 61 5
COLOUR_TEXT_REGION 2 61 5 61 50
HELIX 8 61 36
COLOUR_TEXT_REGION 8 61 36 61 50
HELIX 40 61 40
COLOUR_TEXT_REGION 40 61 40 61 50
STRAND 40 62 46
COLOUR_TEXT_REGION 40 62 46 62 51
HELIX 4 62 4
COLOUR_TEXT_REGION 4 62 4 62 50
HELIX 6 62 17
COLOUR_TEXT_REGION 6 62 17 62 50
HELIX 19 62 39
COLOUR_TEXT_REGION 19 62 39 62 50