Filename Description -------- ----------- jp_JquWmEb.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_JquWmEb.als Alscript command file. Used to generate PS/PDF outputjp_JquWmEb.blast.gz PSIBLAST output (compressed) jp_JquWmEb.coils.csv The output from coils in CSV format jp_JquWmEb.coilseq.lupas_14 The output from coils using a window length of 14 jp_JquWmEb.coilseq.lupas_21 The output from coils using a window length of 21 jp_JquWmEb.coilseq.lupas_28 The output from coils using a window length of 28 jp_JquWmEb.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_JquWmEb.concise.blc A BLC file of the prediction and alignment jp_JquWmEb.concise.pdf A PDF file of the prediction and alignment jp_JquWmEb.fasta Input query sequence in FASTA format jp_JquWmEb.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_JquWmEb.hmm The HHMer2 profile of the alignment jp_JquWmEb.html A HTML file of the prediction and alignment jp_JquWmEb.input Your raw input jp_JquWmEb.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_JquWmEb.jnet The output from Jnet jp_JquWmEb.profile PSIBLAST profile jp_JquWmEb.pssm PSIBLAST PSSM in a format for Jnet jp_JquWmEb.seq Your sequence jp_JquWmEb.simple.html The brief HTML output of the query sequence and prediction only jp_JquWmEb.svg.html A Jalview generated SVG file with summary of the results.