SILENT_MODE BLOCK_FILE jp_JquWmEb.concise.blc MAX_NSEQ 677 MAX_INPUT_LEN 679 OUTPUT_FILE jp_JquWmEb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 130 666 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 667 130 676 H SPACE SUB_CHARS 1 667 130 676 E SPACE SUB_CHARS 1 667 130 676 - SPACE STRAND 8 670 19 COLOUR_TEXT_REGION 8 670 19 670 51 STRAND 48 670 53 COLOUR_TEXT_REGION 48 670 53 670 51 STRAND 59 670 64 COLOUR_TEXT_REGION 59 670 64 670 51 STRAND 108 670 112 COLOUR_TEXT_REGION 108 670 112 670 51 HELIX 30 670 43 COLOUR_TEXT_REGION 30 670 43 670 50 HELIX 71 670 89 COLOUR_TEXT_REGION 71 670 89 670 50 HELIX 93 670 100 COLOUR_TEXT_REGION 93 670 100 670 50 HELIX 117 670 126 COLOUR_TEXT_REGION 117 670 126 670 50 STRAND 8 675 19 COLOUR_TEXT_REGION 8 675 19 675 51 STRAND 48 675 53 COLOUR_TEXT_REGION 48 675 53 675 51 STRAND 58 675 64 COLOUR_TEXT_REGION 58 675 64 675 51 STRAND 108 675 112 COLOUR_TEXT_REGION 108 675 112 675 51 HELIX 30 675 44 COLOUR_TEXT_REGION 30 675 44 675 50 HELIX 71 675 92 COLOUR_TEXT_REGION 71 675 92 675 50 HELIX 117 675 126 COLOUR_TEXT_REGION 117 675 126 675 50 STRAND 7 676 19 COLOUR_TEXT_REGION 7 676 19 676 51 STRAND 61 676 64 COLOUR_TEXT_REGION 61 676 64 676 51 STRAND 108 676 112 COLOUR_TEXT_REGION 108 676 112 676 51 HELIX 31 676 43 COLOUR_TEXT_REGION 31 676 43 676 50 HELIX 48 676 54 COLOUR_TEXT_REGION 48 676 54 676 50 HELIX 70 676 76 COLOUR_TEXT_REGION 70 676 76 676 50 HELIX 93 676 102 COLOUR_TEXT_REGION 93 676 102 676 50 HELIX 117 676 126 COLOUR_TEXT_REGION 117 676 126 676 50