QUERY                  : TIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI : QUERY 
UniRef90_D6WGM9        : -MERDEVLRWSNFLQRARVTRWGGMISTPDEVLQRMIRRTLTEMGCPNHILDDLMENCHERRWPPGLSSLETRQNNRRQYENYVCKRVPGKQAVLVLACDNTHMGEDMMVEPGLVMIFAHGIE-- : UniRef90_D6WGM9
UniRef90_R7VLB0        : --DQDEIIRWVGTLSPARVSRWGGMISTPDAVLQSVIKRALIESGCPSHILNDLMENAHERRWPPGLSTLETRQINRRQYENYVSKRIPGKQAVVVMSCENAHMPDEMIMEPGLVMIFAHGVD-- : UniRef90_R7VLB0
UniRef90_G6CRI0        : -MERDEVVRWAGSLARARVTRWGGMISTPDDVLQMMIKRSLSESGCPPHIIDDLMENCHERRWPPGLSSLETRQNNRRLYEKYVCKRVPGKQAVLVLQCDNTHVDEHMMVEPGLVMIFAHGIE-- : UniRef90_G6CRI0
UniRef90_B7QA97        : -VEQDEVMGWAAKLQRARVTRWGGMISTPDAVLQAMVKRALTDSGCPQHILQALIENAHERRWPPGLSTLETRQMNRRHYESYVCKRIPGKQAVVVVACENQHMNEDMVLEPGLVMIFAHGIE-- : UniRef90_B7QA97
UniRef90_S4R997        : --EQNEVLGWVNALQPARVTRWGGMISTPDAVLQAVIKRSLLESGCPLAVVTGLIENSHERKWPPGLSTLETRQMNRRYYENYVTKRVPGKQAVVAMALENQHMGDDMIVEPGLVMIFAHGVEDV : UniRef90_S4R997
UniRef90_Q7PUE3        : -MERDEVMRWCNGLARARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDDLMENCHERRWPRGLSSLETRQNNRRIYENYICRRVPGKTAVLVLQCDNTHMNEDVMVEPGLVMIFAHGIE-- : UniRef90_Q7PUE3
UniRef90_K7J621        : -MERDEVARWSATLPRARVTRWGGMISTPDELLQTMIKRTLSEYNCPPHVINELMENCHERKWPAGLNSLETRQNSRRQYENYVCKRVPGKQAVIVLHCDNTHMPEDMTIEPGLVMIFAHGIE-- : UniRef90_K7J621
UniRef90_W4YVM2        : -IENNEVVRWVNSMPLARVTRWGGMISTPDVVLQTVIKRSLLESHCPAHIVAELMENAHERNWPPGLSTLETRQMNRHTYEQYVCRRIPSKQAVLVMACDNAHMGEDFTLDPGLVMIFAHGIE-- : UniRef90_W4YVM2
UniRef90_E9GFX6        : -MEADEVRRWAETLPKARVLRWGGMISTPDTVLQAMIKRALSESGCPPHIIQDLMENAHERRWPTGLSSLEIRQLNRRQYENYVCRRIPGKQAVAVMACDNGHMNPDMILEPGLIMIFAHGVE-- : UniRef90_E9GFX6
UniRef90_A7RGH1        : -IEHNELLEWVLSLQPARVTRWGGMISTPDAVLQAVIRRALADSGCPSNILNELMENAHERRWPPGLSTLETRQLNRRRYEQYVCHRIAGKQAVVIMKCENEHMGETMTLDPGIVMIFAHGIE-- : UniRef90_A7RGH1
UniRef90_T1FMJ0        : --ELDEIRRWVDSLQMSRVTRWGGMISTPDAVLQTVIKRALIECGCPPSIVNDLIENSHERRWPIGLKTLEARQLNRRMYENYVCKRIPGKQAVLVMSCENEHMNSDMLVEPGLVMIFAHGVE-- : UniRef90_T1FMJ0
UniRef90_T1JE70        : -MEQDEVVKWSKSLTRARVTRWGGMISTPDAMLQSLIKRALSESGCPAHIINDLIENAHERRWPAGLSTLETRQINRRYYDNYICKRIPGKQAVVVMACENAHMNEELILEPGL----------- : UniRef90_T1JE70
UniRef90_T2M5Z9        : ----DEVLQWLQTLPKAKVTRWGGMISTPDAVLQAVIRRSLSDSGCPSYILDDLMENAHERRWSQGLSTLETRQINRRRYEQYIARRIPGKQAVVVMACENHHMGMLLVQEPGIVMIFAHGIE-- : UniRef90_T2M5Z9
UniRef90_J9KG87        : -LERDEIERWSSSLPQARVTRWGGMISTPDEYLQNNIKQALIESGCPAHILDDLVKNCHERNWPSGLSSLETRQHNRRHYDRYNCKRIPGKQAVIVLPCDNIMVSDDMMSEPGLIMIFAHGIE-- : UniRef90_J9KG87
UniRef90_E4Z5F0        : -----EIINWAESLNSARVTRWGGVISTPDSVLQRVIRRSLLESGCPNHIVQDLIENAHERRWPRGLSTLETRQLNRRYYDDYVTKRIPGKQAVVVLHCENTHMPTDMISDPGIIMIFAHGVEDV : UniRef90_E4Z5F0
UniRef90_UPI0002658C83 : ---QDQLIQWSATLTEARVTRWGGMISTPDQVLQSMVKRALVDSGCPPTAIHELIENAHERKWPIGLHTLETRQRNRRTYENFVCKRIPGKQAVVVLSCDNVHMGPEMIIHPGLVMIFAHGIE-- : UniRef90_UPI0002658C83
UniRef90_UPI0003F0B7B0 : ------------------VTRWGGMISTPDAVLQAVIKRSLIDSACPAHIVTELMESAHERNWPPGLNTLETRQLNRHTYEQYVTRRIPGKQAVVVMSHDNQHMGEDFTLDPGLVMIFAHGIE-- : UniRef90_UPI0003F0B7B0
UniRef90_B3MV49        : -LDRYSLMQWGNGLPLANVRTWGSLISTPDTPMHVMVRDVLRTCGCPMHLLNLMVDPCHETRWPDALITLDARRENHHRLNQYVTRILPGKPCVVVLGGDNTHMPENLRPTLGLVMIFVDGVEEM : UniRef90_B3MV49
UniRef90_UPI00021A49F4 : --------QWLSLLRPARIRHWGGIISTPDSILQSIIRQALSSSGCPQYLLVELMANAHERRWPPGLSVLETRQLNRSRYEQYVTKQVPGKQAVVIMASENEHMGDNMIVSPGMVIIFAHGVD-- : UniRef90_UPI00021A49F4
UniRef90_UPI0003C44AE9 : TIEYNEILES----RPA-------------------IKRSRVESGCPTSIINELIENAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDMVLEPGLVMIFAHGVEEI : UniRef90_UPI0003C44AE9
UniRef90_H0ZZG3        : -------MWWVDSLHP-RETRWGG-CSTPDAVLQAVIKRSLVE-GCPASITNELIENAS-ATGPQGLATLETRQMNHRYYENYVAKRIPGKQAVVVMACENQHMGEDMVLEPGLFLIFAHGVEEI : UniRef90_H0ZZG3
UniRef90_B4KIR5        : -LDRYALMRWGRGLPLASVRTWGSLISTPDMPMRLMVREGLRASGCPMHLMEILLDCCHEDSWPEGLTTLEMRRLNLHRLAQFVTRLLPGKPCAVILGGDNAHMPENLRPVLGVIMIFVDGVDE- : UniRef90_B4KIR5
UniRef90_B4N0B4        : -LERFSLMQWGNNLRLAHITNWGSLISTPDIFLHMRIRDGLGASSCPLNLINKIADRCHEERWPEGLLNLNTRRENHHRLMLYVTRILPGKSCVVMLGCDNTHMPENLRPGVGMAMIFDDGVVE- : UniRef90_B4N0B4
UniRef90_UPI0002687D6D : TIEYNKILKRVNPLQPARVTHXGGLISTPDSVLQAVIKCFSVESDCPASTVNELVTKPSECSWPQGLTALETRQX-----ENHVAKCIPGKQAIVVMACENQHMSDNIMQEPELIMIFVH----- : UniRef90_UPI0002687D6D
UniRef90_B4MM21        : -LDRYSLMQWGSVLPAATIRNWGSLISTPDIFMHMRVRDGLSSCSCPMHLINKIADRCHEDRWPNGLISLEARRENQDSFVDFSTRLLPGKSCVVVLGGDNLHMPENLRPKLGLIMIFVDGVVE- : UniRef90_B4MM21
UniRef90_B4JP61        : -LDRYWLMRWGRSLPLASVRTWGSLISTPDSTMVQTVREGLRASGCPMRLMGMLLDCSYEESWPDGLSTLEMRRMNQHRLAQFVTRLLPGRPCVILLGGDNAHMPDNLRPALGIVIIFINGVDE- : UniRef90_B4JP61
UniRef90_Q29PB4        : -LDGYAVSHWCAGLPTARVNNWGSVVSTPDNEMHFLVRNSLRASGCPMHLLNTMVEHCHEERWPAAMATLQRRRANQAQMTQFVSRLISGRQCLCIFGVDNYHVPENLRPFLGITMIFVDGVEQL : UniRef90_Q29PB4
UniRef90_E0VW63        : -MEQDEVVRWSATLPRARVTRWGGMISTPDALLQAA-----------------------------GLSSLETRQSNRRSYENYVCKKVPGKQAVVVLHCDNHHMTDDMITEPGLLMIFAHGIE-- : UniRef90_E0VW63
UniRef90_UPI000443574E : --QHNETLQEVNSLQPERMTSQESKRSTPNPSHQQMIKTSSIESDCPXAIANKLRKNTTKSSRPLGLNTREMGQITGRFGEXYMAKHVTGETAMVANVWDKDHTDEDQRPEPGSGMTSA------ : UniRef90_UPI000443574E
UniRef90_V5GD42        : -MERDEVLRWSNSLQRARVTRWGGMISTPDEILQRMIKRTLTEMGCPPHILDDLMENCHERRWPPGLCSLETRQNNRR----------------------------------------------- : UniRef90_V5GD42
UniRef90_X1Y9X7        : --------------------------------------RAMRVSNPAMRAIADQMERDEVTRWSNGLA--------RARVTRWGGMISTPDDA---LQCDNTHMNEDVMVEPGLVMIFAHGIE-- : UniRef90_X1Y9X7

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-- :
OrigSeq                : TIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI : OrigSeq

Jnet                   : ---HHHHHHHH-------------------HHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------EEEEEE---------------EEEEEE------ : Jnet
jhmm                   : ---HHHHHHHH-------------EEE----HHHHHHHHHH-----HHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHH--------EEEEEEE--------------EEEEEE------ : jhmm
jpssm                  : ---HHHHHHH--------------------HHHHHHHHHHHH-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH------EEEEEE---------------EEEEEE------ : jpssm

Lupas 14               : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : -B----BB-BB--B----B----BBBBBB---BB-BB--BB--B-BBB-BB--BB--B----B--BB--B--B--B---B--BBB-BB----BBBBBBB---BB---BB--BBBBBBBBBBB--- : Jnet_25
Jnet_5                 : ------B-----------B-------------B---B---------B--BB--B-----------B-------------B---BB--B----BBBBB----------B---BBBBBBB------- : Jnet_5
Jnet_0                 : ------------------------------------B-------------------------------------------------------BB-B------------------BBB-------- : Jnet_0
Jnet Rel               : 99668887641577776535677711266318999999987038880689999986043387527887999998747999999810168884588860067776666535774488885378899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.