QUERY           : MNIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSLQK : QUERY 
UniRef90_B9KAT5 : MNVDEIERKIDEAIEREDYEHLRVLLKEREKLLKDLSAEKLSEILEKDRERLRIIEERKSSLFRELSGLRNIKGSLQK : UniRef90_B9KAT5
UniRef90_A6LP45 : --IIELEKKIDECIEKEDFETLNKLLEKREEFLKELPKEILKMLHEKDKTRMEKIKKIIASLKQQAKNLRLGEKALK- : UniRef90_A6LP45
UniRef90_H9UEY0 : -DILTIEKEIDEAIESEDYEKLNTLLDEREKLLPKLTENELREIYQRDQHRMKVLEEKMKEFKETAIKMETGKKMVQ- : UniRef90_H9UEY0
UniRef90_A7HNV3 : LDILEIEKQIDLAIEDEDYEKLNTLLDQREKLLPILPENTLREIYERDLKRQENLKQKFEELKSLTKNIEDGKRMVQ- : UniRef90_A7HNV3

                : 1---------11--------21--------31--------41--------51--------61--------71------ :
OrigSeq         : MNIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSLQK : OrigSeq

Jnet            : --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm            : --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm           : --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : --CCCCCCCCCCCCCC-------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : -------------------------------------cccccccccccccccccccccccccccc------------- : Lupas 28

Jnet_25         : --B--B---B--BB----B--B--BB--B--BB--B----B--BB------B--B--BB--BB--B--B--B---B-- : Jnet_25
Jnet_5          : -----B---------------B------------------B--B-----------------B---------------- : Jnet_5
Jnet_0          : ---------------------B-------------------------------------------------------- : Jnet_0
Jnet Rel        : 981899999999998603689999999999874116378999999999999999999999999874799999986048 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.