SILENT_MODE BLOCK_FILE jp_83rHKfc.concise.blc MAX_NSEQ 1034 MAX_INPUT_LEN 1036 OUTPUT_FILE jp_83rHKfc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 177 1023 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1024 177 1033 H SPACE SUB_CHARS 1 1024 177 1033 E SPACE SUB_CHARS 1 1024 177 1033 - SPACE HELIX 3 1027 20 COLOUR_TEXT_REGION 3 1027 20 1027 50 HELIX 29 1027 40 COLOUR_TEXT_REGION 29 1027 40 1027 50 HELIX 67 1027 77 COLOUR_TEXT_REGION 67 1027 77 1027 50 HELIX 81 1027 95 COLOUR_TEXT_REGION 81 1027 95 1027 50 HELIX 104 1027 118 COLOUR_TEXT_REGION 104 1027 118 1027 50 HELIX 130 1027 141 COLOUR_TEXT_REGION 130 1027 141 1027 50 HELIX 146 1027 156 COLOUR_TEXT_REGION 146 1027 156 1027 50 HELIX 160 1027 170 COLOUR_TEXT_REGION 160 1027 170 1027 50 STRAND 49 1032 51 COLOUR_TEXT_REGION 49 1032 51 1032 51 STRAND 56 1032 57 COLOUR_TEXT_REGION 56 1032 57 1032 51 STRAND 124 1032 125 COLOUR_TEXT_REGION 124 1032 125 1032 51 HELIX 3 1032 21 COLOUR_TEXT_REGION 3 1032 21 1032 50 HELIX 29 1032 40 COLOUR_TEXT_REGION 29 1032 40 1032 50 HELIX 67 1032 77 COLOUR_TEXT_REGION 67 1032 77 1032 50 HELIX 82 1032 95 COLOUR_TEXT_REGION 82 1032 95 1032 50 HELIX 105 1032 118 COLOUR_TEXT_REGION 105 1032 118 1032 50 HELIX 130 1032 140 COLOUR_TEXT_REGION 130 1032 140 1032 50 HELIX 147 1032 157 COLOUR_TEXT_REGION 147 1032 157 1032 50 HELIX 159 1032 171 COLOUR_TEXT_REGION 159 1032 171 1032 50 STRAND 95 1033 96 COLOUR_TEXT_REGION 95 1033 96 1033 51 STRAND 99 1033 99 COLOUR_TEXT_REGION 99 1033 99 1033 51 HELIX 2 1033 19 COLOUR_TEXT_REGION 2 1033 19 1033 50 HELIX 29 1033 40 COLOUR_TEXT_REGION 29 1033 40 1033 50 HELIX 69 1033 76 COLOUR_TEXT_REGION 69 1033 76 1033 50 HELIX 80 1033 92 COLOUR_TEXT_REGION 80 1033 92 1033 50 HELIX 94 1033 94 COLOUR_TEXT_REGION 94 1033 94 1033 50 HELIX 104 1033 118 COLOUR_TEXT_REGION 104 1033 118 1033 50 HELIX 130 1033 141 COLOUR_TEXT_REGION 130 1033 141 1033 50 HELIX 145 1033 154 COLOUR_TEXT_REGION 145 1033 154 1033 50 HELIX 161 1033 169 COLOUR_TEXT_REGION 161 1033 169 1033 50