QUERY : SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDP : QUERY
UniRef90_UPI0004442D06 : SFVGLRVVAKWSSNGYFYSGRIVKDAGDSRFRLRFDDGYECEVAGKDILLCDP : UniRef90_UPI0004442D06
UniRef90_A1L1W2 : SFVGLRVLAKWSSNSYFYSGSITRDLGENRFRLLFDDNQECEVQGKDILLCDP : UniRef90_A1L1W2
UniRef90_UPI000442075D : -LVGLRVVAKWSSNGYFYSGTITQDGGGAKYRLLFDDGYECDVLARDVLLCDP : UniRef90_UPI000442075D
UniRef90_S4RQW7 : -LVGLRVVAKWSSNEYFYSGRVVGEREAGRCRVRFDDGYECDVAGRDVLLCDP : UniRef90_S4RQW7
UniRef90_U6HUG1 : ---GVLVYAKWYSNKFFYAGQIAETSAEDKFRILFDDNSQKNVTGKNIILAE- : UniRef90_U6HUG1
UniRef90_U6I5U3 : --LGMFVYAKWWNSNKFFAGKIAKSLSNGKFQIEFEDNSAAEVTARNVILTE- : UniRef90_U6I5U3
UniRef90_W4XBH4 : ---GVRVFTRW-MDGFYYPGTIKKEEKNNRLKIAFDDGDMRSVNSKDVIIKD- : UniRef90_W4XBH4
UniRef90_K9I634 : -----RVFALWSGNKLYYPGIVSESVGDGRYNIKFDDDAEGTVSTDDM----- : UniRef90_K9I634
UniRef90_UPI0003B5B5BC : ---------------------IVKDAGDSRFRLRFDDGYECEVAGKDILLCDP : UniRef90_UPI0003B5B5BC
UniRef90_UPI0003F0BF34 : ---GVRVFTRWP-DGYYYPGIVVKDDKNGRFIVKFDDGDTRPVSEKNIFIKE- : UniRef90_UPI0003F0BF34
UniRef90_B3RSK0 : --IGNRVFARWSSDSHYYPGRVVRDRSNSRYTIAFDDGTKSTISSKHIVVKE- : UniRef90_B3RSK0
UniRef90_B0CSL8 : -----RVFALWKQDGYYYPGYVNRLRNDMRYEVKFDDNTTADLNLDQMRRCD- : UniRef90_B0CSL8
UniRef90_UPI0004623DB1 : -----RVFALWKTDGHYYPGTVYSLVGPGRYHIYFDDDTEQDAELKFMRAC-- : UniRef90_UPI0004623DB1
UniRef90_X8JS86 : -LVGTRVLAWWSGGNYFF-GTVVSHEGKGRYQINFDDGTSSKV---------- : UniRef90_X8JS86
UniRef90_K1R6A9 : -----RVMAKWK-DGYYYPGII-QKVEGSRYQVKFDDGDSRYVRHSEALLIE- : UniRef90_K1R6A9
UniRef90_A7SLZ0 : ---GVRVLARWSDN-FFYPGEVTGPSKAGLFNVTFDDGDKRRLRAERLIAKD- : UniRef90_A7SLZ0
UniRef90_T1JKQ0 : ---GERVTAKWPGSNLYYGGVVTKLRRDHQYEIRFGDDSVHTVHPRNVHLSTP : UniRef90_T1JKQ0
UniRef90_R7UIH0 : ---GTNVFAMWK-NKSFYPGKIKSNLTRDRYTVQYEDGAVKQVKAADLIICN- : UniRef90_R7UIH0
UniRef90_UPI000359AEF0 : SIIGTRVSALWSQDGRFYPAIIQSQVSEAVYAVRFDDGSTQHVKSRNVI---- : UniRef90_UPI000359AEF0
UniRef90_K1PZ62 : SIVGTKVCALWK-DGRFYPGVITDHSGEQKYTVVFDDGFQKSVYARHII---- : UniRef90_K1PZ62
UniRef90_C3YBF4 : ---GARVMALLVSDKHWYPGVILKTLKNDRYLVRFEDEDETTVRPREI----- : UniRef90_C3YBF4
UniRef90_UPI00044181AB : -----RVVAKWDKDGCYYSGTIVDRPSSGAWSVYFDDGSRASIATNDLRKCE- : UniRef90_UPI00044181AB
UniRef90_E9C230 : ---GVRALVKWVDNSY-YSGTVVAVTGNNEFKVLFDDGD-------------- : UniRef90_E9C230
UniRef90_T1KHY1 : ------VFAKWAQDKNFYPGKTTSPQTDSKWLITFDDGEKRSVHESEII---- : UniRef90_T1KHY1
UniRef90_B0WYV2 : -------MARWS-DRKYYAGKVTGYKGDNKYMVLFEDGASK-ALSKDVIV--- : UniRef90_B0WYV2
UniRef90_UPI0004413A60 : -----RVFALWKGTAQYYSGVVHESVGTGRFMVKFDDNDSAELELRHLRAC-- : UniRef90_UPI0004413A60
UniRef90_S8FA79 : -----RVFALWRQDNHYYSGTVHSSTSPARYRINFDDGTVDDVDLSKMRLC-- : UniRef90_S8FA79
UniRef90_UPI000258DB1D : --VGERILATWA-DGRKYPAKVNAVLGNDRYDVLFDDGYAKTVKSSKM----- : UniRef90_UPI000258DB1D
UniRef90_A0A026WFE5 : SLIGRTVFAKWSDNNY-YPG-IASDRVKGKYKVNFYDG--------------- : UniRef90_A0A026WFE5
UniRef90_T0RJS0 : --VGTKVEAKYKGKAKFYPGKITKVHADGSYDIDYDDGHEKRVESDMI----- : UniRef90_T0RJS0
UniRef90_F8PE55 : -----RVFALWKQDGHYYSGTVLQSPSSTRYLVKFDDNTE------------- : UniRef90_F8PE55
UniRef90_A0A034VBI7 : -------MARWSGPRKF-PGTIKKILGNDMYEVLFDDGYVKNVRANKILPLDP : UniRef90_A0A034VBI7
UniRef90_W8BEM2 : -------MARWSGPRKF-PGTIKKVLGNDTYEVLFDDGYVKNV---------- : UniRef90_W8BEM2
UniRef90_R1BUD0 : ------VAAKYGGGAKYYPGVITRDNGDDTYAIKYDDGDTEDAVKRPLIRTE- : UniRef90_R1BUD0
UniRef90_D0N4R4 : --VGTRVLGRYDGGNEFYSGQISDVQENGKYTIAYDDGEEEDVQIEHIV---- : UniRef90_D0N4R4
UniRef90_V4ACA7 : ---GSAVMAKWK-DGYYYPGTIKQIDSE-RVMVSFDDGDVKYVKNSNILL--- : UniRef90_V4ACA7
UniRef90_UPI000359AD6E : ---GAQIMGKWQ-DGFYYPGVLAREPSGKKFLVKFDDGSQKSVKPHEIILA-- : UniRef90_UPI000359AD6E
UniRef90_F0Y9I4 : ------VFCRFQQDAEFYPATVVRDNGDGTYAVLFDDGDEDDAANRRAI---- : UniRef90_F0Y9I4
UniRef90_K1QSS5 : --VGDHVYAKWT-DCKMYPGKVTAVNTDGSFDILFYDGFKKTVQGINI----- : UniRef90_K1QSS5
UniRef90_A7SS74 : SSLGLRVCAPWK-DSLYYSGVVSRPTGESTYTVLFDDGYIAEV---------- : UniRef90_A7SS74
UniRef90_B3RXW6 : ---GQRVVARSSSDGFYYAGTVIQSSSIRRAEIEFDNLDIQVIPTRFII---- : UniRef90_B3RXW6
UniRef90_A0A024UIR1 : --VGQKVEARYKQRQKYYKGKIARARSNGTYDIEYDDGEKEIGVAKDMI---- : UniRef90_A0A024UIR1
UniRef90_H9KKU7 : --VGTRVVAIFSSN--FYSGVIAEPPKATRYLIFFDDGYAQYVVHKDIYL--- : UniRef90_H9KKU7
UniRef90_W2HKD0 : --VGDKVKARYKNGSKLFSGKISRVRSDGTYDIKYDDGDVETRVARDLI---- : UniRef90_W2HKD0
: 1---------11--------21--------31--------41--------51- :
OrigSeq : SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDP : OrigSeq
Jnet : ----EEEEEEE-----EEEEEEEEE----EEEEEE------------EEE--- : Jnet
jhmm : ----EEEEEEE-----EEEEEEEEE----EEEEEE-----EE------EE--- : jhmm
jpssm : ---EEEEEEEE-----EEEEEEEEEE---EEEEEE------------EEE--- : jpssm
Lupas 14 : ----------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------- : Lupas 28
Jnet_25 : --BBBBBBBBB-----BBBB-B--------B-B-B-------B----BBB--- : Jnet_25
Jnet_5 : ------BBB------------B--------B-B--------------B----- : Jnet_5
Jnet_0 : ------B---------------------------------------------- : Jnet_0
Jnet Rel : 99337888872588845775677643577068884367771166662164489 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.