QUERY                  : AFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERFFPKNDDE : QUERY 
UniRef90_W8QGP1        : GFNQMAFNKALLEYVVKTQFSVNKVLGIECLSPHVKDDPRWQWKGMVQNIQEDVQEVMLRFFPDEDNE : UniRef90_W8QGP1
UniRef90_D4HQJ8        : GFNQMAFNRALLESMVKTQFTVNKVLGIECLSPHVHGNPRWEWSGLIENIRDDVNAVIEQFFPKVDD- : UniRef90_D4HQJ8
UniRef90_G8XCH1        : GFNQTEFNKILLENVMKTQFTVSKLLAIGSLSPHVTGDERFEFRSMVSNIREDAKDVISHFFPEQEEE : UniRef90_G8XCH1
UniRef90_V1WGC2        : AFNQTEFNKILLENVLKTQSSVAKILGIGSLSPHVAGNPKFEYANMVEDIKDKVITEMERFFPYDDNK : UniRef90_V1WGC2
UniRef90_W8V311        : GFNQMAFNKALFEYVVKTQFTMNKVMGMECLSPHVKEDPKWQWKSMVHNIQEDVREVMRAYFPEEAED : UniRef90_W8V311
UniRef90_Z5CRP7        : GFNQAEFNKMLLENVIKTQFSISKVLAMESLSPHIQGDERFDFKSMVMNIRDDAKEVVERFFPDTDDE : UniRef90_Z5CRP7
UniRef90_S4VC15        : GFNQMAFNKVLLETVLKTQFATNKILGISCLSPHISGNQKFEWRFMIDTILEDTKEVVDTFFPESED- : UniRef90_S4VC15
UniRef90_W7NTY1        : GFNQALFNKTILENILKTQLTTSKLLGMTSLSPHLEGNEKFAFKEMVTSIREDVEEIVSQFFPKEDDD : UniRef90_W7NTY1
UniRef90_UPI0004666D41 : SFNQMEFNKVLLENVLKTQFGICKVMGMESLSPYVQGKEKFVYSNMRSDILEDVRQVIEKFFPSEHND : UniRef90_UPI0004666D41
UniRef90_UPI000464F043 : GFNQMAFNRAILGSVMKTQFATNKILGISSQSPHVAGNPKFEWRYMIESILADTHQVVQLFFPESEE- : UniRef90_UPI000464F043
UniRef90_R9QHL2        : SFNQALYNKTILENVMKTQFIVSKLLAMESLSPHLAGNEKFDFRDMVTCIREDVQQIVEKFFPQEEE- : UniRef90_R9QHL2
UniRef90_P33788        : GFNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIASGNFDYAVIKPAIDKFAREQVSIFFPDDEDD : UniRef90_P33788
UniRef90_E0WR85        : -FNQTEFNKVILENVVKTSFICQKLLGINSFMSEIQDNEKLDYKLMAYAVRNDTAEVINEFFPKNEE- : UniRef90_E0WR85
UniRef90_D2U4P1        : -FDEYHYRKLMLENTLKINKAVSKILGMQSFAPYLEGKENFEYQKMVNEIREKTKEEIKKLFPEE--- : UniRef90_D2U4P1
UniRef90_D2U4M8        : SFNQEAFNKVVLESLIKTKKAVSLILGMQSFSPYLEGKENYEYHKMVNEIRDAAKEEIKKFFPDD--- : UniRef90_D2U4M8
UniRef90_T2HS63        : GFNQMEYNKIMLDNIARVRAMCSEIMKMNALSHEVISNGNFDNEVMKRSITKFAEDQVRIFFPEEEMD : UniRef90_T2HS63
UniRef90_D4EA62        : -FNQTEFNKVILENVLKTQLAMARVLGASTLAPYVADKPKLNYQQIISEIKESVNDELGRFF------ : UniRef90_D4EA62
UniRef90_W8UCC4        : GFNQMEYNRLMLDHMTRVRAMCTEIMKMGALSQESIASGNFELEVIKKAVARYAEEQTSIFFPDEEDE : UniRef90_W8UCC4
UniRef90_Q2VP28        : GFNQMEYNKLMLDNISRVRFMCSEIMNMSMLNQESVASGYFTIEKIKPAMEKFVNEQVGIFFHDDEE- : UniRef90_Q2VP28
UniRef90_V5EEJ3        : -------------------------MGIESLSPHVSGNPKFEYANMVEDIREKVSSEMERFFPKNDDE : UniRef90_V5EEJ3
UniRef90_T7G4L0        : AFNQAEFNKVLLECAVKTQSTVAKILGKVRISGEI--------------------------------- : UniRef90_T7G4L0

                       : 1---------11--------21--------31--------41--------51--------61------ :
OrigSeq                : AFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDIREKVSSEMERFFPKNDDE : OrigSeq

Jnet                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH-------- : Jnet
jhmm                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH-------- : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH-------- : jpssm

Lupas 14               : -------------------------------------------------------------------- : Lupas 14
Lupas 21               : -------------------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------- : Lupas 28

Jnet_25                : -B---BBBBBBB-BBB-B-BBBBBBBBB-BBB-BB-----B-B--BB--B---B---B--BB------ : Jnet_25
Jnet_5                 : ------B---BB-----B---B--B-----B------------------B---B---B---------- : Jnet_5
Jnet_0                 : ----------B--------------------------------------------------------- : Jnet_0
Jnet Rel               : 99579999999999999999999999875155333567764345389999999999986126788899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.