SILENT_MODE
BLOCK_FILE jp_ktwBaM1.concise.blc
MAX_NSEQ 959
MAX_INPUT_LEN 961
OUTPUT_FILE jp_ktwBaM1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 116 948   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 949 116 958 H SPACE
SUB_CHARS 1 949 116 958 E SPACE
SUB_CHARS 1 949 116 958 - SPACE
STRAND 26 952 30
COLOUR_TEXT_REGION 26 952 30 952 51
HELIX 3 952 18
COLOUR_TEXT_REGION 3 952 18 952 50
HELIX 40 952 66
COLOUR_TEXT_REGION 40 952 66 952 50
HELIX 76 952 95
COLOUR_TEXT_REGION 76 952 95 952 50
HELIX 100 952 114
COLOUR_TEXT_REGION 100 952 114 952 50
STRAND 27 957 30
COLOUR_TEXT_REGION 27 957 30 957 51
HELIX 3 957 18
COLOUR_TEXT_REGION 3 957 18 957 50
HELIX 40 957 66
COLOUR_TEXT_REGION 40 957 66 957 50
HELIX 76 957 95
COLOUR_TEXT_REGION 76 957 95 957 50
HELIX 100 957 114
COLOUR_TEXT_REGION 100 957 114 957 50
STRAND 25 958 30
COLOUR_TEXT_REGION 25 958 30 958 51
HELIX 3 958 19
COLOUR_TEXT_REGION 3 958 19 958 50
HELIX 31 958 32
COLOUR_TEXT_REGION 31 958 32 958 50
HELIX 40 958 66
COLOUR_TEXT_REGION 40 958 66 958 50
HELIX 76 958 96
COLOUR_TEXT_REGION 76 958 96 958 50
HELIX 100 958 114
COLOUR_TEXT_REGION 100 958 114 958 50