QUERY : RPPKVGSSGNASWFQAIKAKKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQARFKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDGGPDGNFRWDFIPL : QUERY
UniRef90_Q96605 : -PPKVGGTGQASWFQSLKEKKRTGTPPTFEGSGVPDNSNVKPQFQHGYWKRQHRYKPGKGGRKPVADAWYFYYTGTGPFGDLKWGDSNDDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGGPDNNYRWDFIAL : UniRef90_Q96605
UniRef90_Q5GN04 : -PPKVGGSGSASWFQALKSRKPDGPEPHFPGSGVPVNDNVDPKASHGYWRRQRRFKPGKGGRKPVGDAWYFYYTGTGPLADLQYADPHEDVVWVKAKGADTSTRSKQGTRDPDKFDQFPLRFADGGPDNGFRWDFIP- : UniRef90_Q5GN04
UniRef90_Q5GMY9 : -PPKIGNSSQASWFQPLKARKLTSPPPTFTGSGVPENDNVKKAARHGYWKRQRRYKPGKGKRTPVTDAYYFYYTGTGPFADLKWGQQNDDVIWVADKDADPNVKSGQGTRDPDKFDQFPLRFSDGGPDDNYRWDFIPV : UniRef90_Q5GMY9
UniRef90_A3EXH0 : -KPKAAPPQNVSWFAPLVQT-GKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKGGKQVLANPRWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGGIPKGFY------- : UniRef90_A3EXH0
UniRef90_F1DAZ5 : -KPRAAPAQNVSWFLPIVQT-GKQDLRFARGEGVPISQGVDTTYQHGYWLRRQRTFNKGGKQVQANPRWFFYYTGTGPYEGLRYGSRNNEIIWVGNEGANVNRLGDMGTRNPANDAGIPVQLAEGIPKGFY------- : UniRef90_F1DAZ5
UniRef90_Q5MQC6 : --PQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGVPPSEAKGYWYRHSRFKTADGQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPSDVSSRDPTTQEAIPTRFPPGILPQGYYVE---- : UniRef90_Q5MQC6
UniRef90_T1SHZ3 : -----------SFYNPITLEQGSKFWNLCPRDFVPKGIGNK-DQQIGYWNRQVRYRVVKGQRKDLPERWFFYFLGTGPHADAKFKDKIDGVFWVARDGA-MNKPTTLGTRGTNND-SKPLKFDGEIPPQ--------- : UniRef90_T1SHZ3
UniRef90_C7DZI4 : -------------------------------------ENLKTSQQHGYWRRQVRYKQGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDGGPDGNFRWDFIPL : UniRef90_C7DZI4
UniRef90_P04134 : ---RGRKNNNISFFNPITLQQGSKFWNLCPRDFVPKGIGN-RDQQIGYWNRQTRYRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGA-MNKPTTLGSRGANN-ESKALKFDGKVP-GEFQLEV--- : UniRef90_P04134
UniRef90_Q9DQX6 : ----------YSWFSGITQFQKGKEFQFAEGQGVPIAPGIPATEAKGYWYRHNRFKTADGNQRQLLPRWYFYYLGTGPHAKAQYGTNIDGVFWVANKQADVNTPADVVDRDPSSDEAIPTRFPPGTVPQGYYIE---- : UniRef90_Q9DQX6
UniRef90_Q5DQ88 : -----------SFFNPITLKPGSKFWDLCPRDFVPLKIGNK-DQQIGYWNRQIRYRMAKGQRKDLPERWFFYYLGTGPHADAKYKQKLDGVVWVAKEGAMTK-PTTLGTRGPNN-ESKALKFDVKVPS-EFQLEV--- : UniRef90_Q5DQ88
UniRef90_F1BYM6 : RKPRAPPSSNVSWFTALTQ-HGKEDLKFPQGYGVPQNVNVKPDHEIGYWRKASRKVNKGGKSVELDPRWYFYYLGTGPEASLKYGTRKDGIVWVVTQNALDLPVPDVGTRNPANDAALVTTFRPRTPPKGFYVE---- : UniRef90_F1BYM6
UniRef90_P59595 : RRPQGLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRTRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGLPKGFY------- : UniRef90_P59595
UniRef90_A8JNZ6 : -----------SLFAPLRVTDGKNFWNVMPRNGVPTGRGN-PDQQIGYWVEQKRWRMQKGQRKDQPSNWHFYYLGTGPHADAPFRKRIQGVHWVAVDGAKTS-PTGLGVRNRNKEPATP-QFGFQLPA---------- : UniRef90_A8JNZ6
UniRef90_U5LQW6 : -KPRPAPNVSVSWYTGITQ-HGKQPLAFPAGQGVPLNANSTPKQNAGYWRRQDRKLNTGNGVKQLAPRWYFYYTGTGPEANLPFRTVKDGIYWVWEEGA-SEAPSDFGTRNPANDAAIVTQFAPGLPKN--------- : UniRef90_U5LQW6
UniRef90_F1DAY7 : ----------YSLFNPVRTTNGEPLWKVLPNNAVPLGNGGK-DQQIGYWNQQTRWRMQKGQRKDLPPNWHFYYLGTGPHADVPYRQRTEGVFWVAKEGAKTE-PTNLPTRRANQQPQIP-KFSGGLPNN--------- : UniRef90_F1DAY7
UniRef90_Q0Q0A2 : -----------SYYAPLRVADDKLFLKSMPGNGVPKGMGGK-SEQIGYWTEQRRWRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQVGVFWVAKQGSKTE-PTNLGTRNRNQPLRTP-EFDFALPN---------- : UniRef90_Q0Q0A2
UniRef90_Q6Q1R8 : -RKKFPPP---SFYMPLLVSSDKAPYRVIPRNLVPIGKGNK-DEQIGYWNVQERWRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGAKTVN-TSLGNRKRNQKPLEP-KFSIALPPELSVVEF--- : UniRef90_Q6Q1R8
UniRef90_B6VDZ1 : ----AVPTTDASWFQVLKAQNKKAIHPQFKGNGVPVNSAIKPAENHGYWLRFARQKPGGAQ---IPPSYAFYYTGTGPRGNLKYGEETSRITWVKGPGADTTIKPHVAKRNPNNHQLLPLRFPPGGPAAGFRVD---- : UniRef90_B6VDZ1
UniRef90_F1DAY0 : -----------SLFAPVTVTSDKNFWSIMPKNGVPTNGKANKDQLIGYWTEQKRWRMNRGQRKELPSKWHFYYLGTGPHADAQFRKRIEGVYWVANQGAKTEN-TGLGTRRRNQDLIVP------------------- : UniRef90_F1DAY0
UniRef90_Q07499 : -----------SLYAPLRVTNDKPLSKVLANNAVPTNKGNK-DQQIGYWNEQIRWRMRRGERIEQPSNWHFYYLGTGPHGDLRYRTRTEGVFWVAKEGAKTE-PTNLGVRKASEKPIIP-KFSQQLP----------- : UniRef90_Q07499
UniRef90_Q7TG52 : --------------------QKGKEFQFADGQGVPIANGIPATEQKGYWYRHNRFKTPDGQQKQLLPRWYFYYLGTGPYAGASYGDTIEGVFWVASSQADTNTRADIAERDPSSHEAIPTRFAPGTVPQGFYVE---- : UniRef90_Q7TG52
UniRef90_Q0Q099 : -----------SLFAPLRTTDGSLFFRAMPQNGVPKGFGNK-DQQVGYWNEQVRWRMKRGQRQNLPSNWHFYYHGTGPHADAKFREKIQGVFWVAKQGSKV-APTDLPTRKRNQPTIEP-QFDFDLPKN--------- : UniRef90_Q0Q099
UniRef90_Q0Q462 : --PRGRSKGRVSLFAPLRVTDEKPLYKVLPNNAVPQGMGGK-DQQIGYWVEQQRWRMRRGDRVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKT-QPTGLGVRKSSEKPLVP-KFKNKLPNN--------- : UniRef90_Q0Q462
UniRef90_D9J1Z8 : -----------SFFNPITHTGNKKFWNVAPKDLVPKGKGN-RDQQVGYWNRQERWRMQKGQKIQLPSRWFFYYLGTGPHQNAKFQERIDGVYWVGKNGSKT-VPTGLGTRG-SNQESLDLQFDCAVP----------- : UniRef90_D9J1Z8
UniRef90_Q0Q0A0 : --PRRSGRVPFSFYAPIIATGNTPFWKLMPQNGVPNGKGDK-NQQIGYWNEQQRWRTRKGNKETLPSKWHFYYLGTGPHAEEPFRKRTQGVFWVAKEGAKTE-PTGLGTRKKSESLIVP-KFSFKLPEG--------- : UniRef90_Q0Q0A0
UniRef90_H9BR21 : --PRV-PRADASWFQPIKAQNKKITAPSFKKNGVPVNASLQAADQHGYWLRYNRTKSGGGS---IPAAFSFYYTGTGPYATLKFGEPSDRITWVKGPSAVTTNKPKVAKRDPDKHPLLPLTFPPGGVNTGLRVD---- : UniRef90_H9BR21
UniRef90_K4JZT7 : -KPRGRSKVPLSYYSPVMIDGDQPFWKVMPTNAVPTGMGDK-NQQIGYWNEQPRWRMVKGQRKELPSKWHFYYLGTGPQEDARYRQRIEGVFWVAVQGSKTD-PTGLGTRRKGQDLISP-KFAVKIPSN--------- : UniRef90_K4JZT7
UniRef90_H9BR29 : -----VPKADCSWFQIIKAQNKKVQPLAFKGDGVPINTTLPKEMCHGYWLRYKRVKPGGA---PLPPSYSFYYTGTGPRATLKYGELQDRVLWVKSPDADTSIKPKVAKRNPDKHPLLPLRFKPGGPVQGFRID---- : UniRef90_H9BR29
UniRef90_H9BR39 : -----VPVADASWFQPLKAQNKKNTTPSFKGDGVPINTSLDHKAAHGYWLRFNRQKPGGAQ---LPPSFAFYYTGTGPRGNLKYGEGNSRITWVHVKDADTSIKPKVAKRNPQNHALLPLRFPPGGPAQGFRID---- : UniRef90_H9BR39
UniRef90_H9XTN2 : -KPKAAPPQNVSWFAPLVQT-GKAELRFPRGEGVPVSQGVDPTFEHGYWLRTQRSFQKGGKQVLANPRWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTR---------------------------- : UniRef90_H9XTN2
UniRef90_B2BW44 : --PALPTSGNVSWFQAIKGRKAGEEGITFKGPGVPVNENVSKNQNHGYWIQRSRTTPGG---KKLAPLYYFYYTGTGPRDQAKYGQEIPYVTWVKGDGAKTSQLSEAGSRDVNKFPAFPLIFPTG--DGPERGFFI-- : UniRef90_B2BW44
UniRef90_F1DB24 : -----------SYYAPLMVSNDQPFWKALPQNAVPQGMGNK-DQQIGYWNEQVRWRTNKGKRVDLKSKWHFYYLGTGPHADKSFRQKTQGVYWVAVQGSKT-ADTGLGTRKRNQEVKEP-KFSFQLPAN--------- : UniRef90_F1DB24
UniRef90_S5YAG0 : ----------YSYFAPLIINSDQPIWKVLPNNAVPVGKGGK-DEQIGYWNEQPRWRMRKGQRVDVASKWHFYYLGTGPHSEEQYRKRIDGVYWVAVNGAKTS-PTGLGTRSAKTKPLE-LKFNTKIPK---------- : UniRef90_S5YAG0
UniRef90_F1DB18 : -----------SFYAPLMVNDGTPFYKAMPSNGVPKGMGGK-DQQVGYWNEQPRWRMRKGVRQNLPSKWHFYYHGTGPHSDKKFREKVPGVFWVAKQGTRV-APTNLGERKRNQPTRDPT-FDFDLPSN--------- : UniRef90_F1DB18
UniRef90_Q66195 : KPPKVGSSGNVSWFQAIKAKKLNSPPPKFEGSGVPDNENLKASQQHGYWRRHARFKPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDGIV---------------------------------------------- : UniRef90_Q66195
UniRef90_C0LI68 : ----------YSLYRPLLV-DSEQPWKVIPRNLVPTNKKDK-SKLIGYWNVQKRFRTRKGQRVDLSPKLHFYYLGTGPHQDAKFRDRREGVIWVAIDGAKTE-PTGYGVRRKNADPEEP-RFNQNLPNG--------- : UniRef90_C0LI68
UniRef90_E1U191 : --PQGNIIPHYSWFSGITQFQKGRDFKFSDGQGVPLAFGVPLSEAKGYWYRHSRFKTADGQQKPLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPS--------------------------------- : UniRef90_E1U191
UniRef90_C0J8Y7 : -----------SFFNPITLKQGSKFWDLCPRDFVPLKIGNK-DQQIGYWNRQIRYRMVKGQRKDLPERWFFYYLGTGPHADAKYKQKLDGVVWVA------------------------------------------- : UniRef90_C0J8Y7
UniRef90_Q6T1D2 : RRPQGLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRTRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATE----------------------------------------- : UniRef90_Q6T1D2
UniRef90_G0ZCG6 : ------------------------------------------------------------------DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDGGPDGNFRWDFIPI : UniRef90_G0ZCG6
UniRef90_E2GK58 : -------------------------------------------EAKGYWYRHNRFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVPQGYYIE---- : UniRef90_E2GK58
UniRef90_Q1M2X2 : KPPKVGSSGNASWFQALKAKKLNSPPPSFEGSGVPDNENLKTSQQHGYWRRQARYKPSKGAIKPVPDAWYFYYTGTGP------------------------------------------------------------ : UniRef90_Q1M2X2
UniRef90_K9NSN8 : -----------SYFNPITHEGKKPFWTVAPKDFVPIGKGNK-DQQVGYWNRQQRYRIQKGQKVELPDRWFFYYLGTGPHSN--------------------------------------------------------- : UniRef90_K9NSN8
UniRef90_G0ZTH0 : ----------YSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRFKTADGNQRQLLPRWYFYYLGTGPHAKDQY------------------------------------------------------ : UniRef90_G0ZTH0
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131----- :
OrigSeq : RPPKVGSSGNASWFQAIKAKKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQARFKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDGGPDGNFRWDFIPL : OrigSeq
Jnet : ----------EEEEEEEE-----------------------------EEEEEEEEE-----EEE-----EEEE-----------------EEEEE-------------EE-------EEEEE--------EEEEEE-- : Jnet
jhmm : -----------EEEE--------------------------------EEEEEEEEE-----EEE------EE------------------EEEEE------------EEE--------EEEE--------EEEEEE-- : jhmm
jpssm : ----------EEEEEEEEE-----------------------------EEE---E-------EE-----EEEEE----------------EEEEEE---------------------EEEEE--------EEEEEE-- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : ----------BBBBBBB-B------B--B---BBB----B----BBBBB---------------B---BBBBBBBBB----B-B------BBBBB---B-------BB-B-------BBB-B---BB---BBBBBB-- : Jnet_25
Jnet_5 : -----------BBB--B-------------------------------B---------------------BBB-B---------------B-BB----------------------------------------B--- : Jnet_5
Jnet_0 : ------------------------------------------------------------------------------------------------------------------------------------------ : Jnet_0
Jnet Rel : 898878887317763122036777766777765335677766654432121323134677622147774188224777766666777773478861577766677771005677750177615777777517888639 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.