SILENT_MODE BLOCK_FILE jp_yi0Vvl3.concise.blc MAX_NSEQ 236 MAX_INPUT_LEN 238 OUTPUT_FILE jp_yi0Vvl3.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 274 225 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 226 274 235 H SPACE SUB_CHARS 1 226 274 235 E SPACE SUB_CHARS 1 226 274 235 - SPACE STRAND 2 229 7 COLOUR_TEXT_REGION 2 229 7 229 51 STRAND 38 229 40 COLOUR_TEXT_REGION 38 229 40 229 51 STRAND 44 229 49 COLOUR_TEXT_REGION 44 229 49 229 51 STRAND 73 229 78 COLOUR_TEXT_REGION 73 229 78 229 51 STRAND 88 229 93 COLOUR_TEXT_REGION 88 229 93 229 51 STRAND 133 229 138 COLOUR_TEXT_REGION 133 229 138 229 51 STRAND 149 229 155 COLOUR_TEXT_REGION 149 229 155 229 51 STRAND 190 229 195 COLOUR_TEXT_REGION 190 229 195 229 51 STRAND 214 229 219 COLOUR_TEXT_REGION 214 229 219 229 51 STRAND 243 229 248 COLOUR_TEXT_REGION 243 229 248 229 51 STRAND 271 229 272 COLOUR_TEXT_REGION 271 229 272 229 51 HELIX 11 229 22 COLOUR_TEXT_REGION 11 229 22 229 50 HELIX 62 229 62 COLOUR_TEXT_REGION 62 229 62 229 50 HELIX 114 229 126 COLOUR_TEXT_REGION 114 229 126 229 50 HELIX 165 229 180 COLOUR_TEXT_REGION 165 229 180 229 50 HELIX 202 229 209 COLOUR_TEXT_REGION 202 229 209 229 50 HELIX 228 229 237 COLOUR_TEXT_REGION 228 229 237 229 50 HELIX 254 229 266 COLOUR_TEXT_REGION 254 229 266 229 50 STRAND 2 234 7 COLOUR_TEXT_REGION 2 234 7 234 51 STRAND 37 234 40 COLOUR_TEXT_REGION 37 234 40 234 51 STRAND 44 234 49 COLOUR_TEXT_REGION 44 234 49 234 51 STRAND 73 234 78 COLOUR_TEXT_REGION 73 234 78 234 51 STRAND 88 234 92 COLOUR_TEXT_REGION 88 234 92 234 51 STRAND 133 234 139 COLOUR_TEXT_REGION 133 234 139 234 51 STRAND 149 234 155 COLOUR_TEXT_REGION 149 234 155 234 51 STRAND 190 234 195 COLOUR_TEXT_REGION 190 234 195 234 51 STRAND 215 234 219 COLOUR_TEXT_REGION 215 234 219 234 51 STRAND 243 234 248 COLOUR_TEXT_REGION 243 234 248 234 51 STRAND 271 234 272 COLOUR_TEXT_REGION 271 234 272 234 51 HELIX 11 234 22 COLOUR_TEXT_REGION 11 234 22 234 50 HELIX 114 234 126 COLOUR_TEXT_REGION 114 234 126 234 50 HELIX 165 234 180 COLOUR_TEXT_REGION 165 234 180 234 50 HELIX 202 234 209 COLOUR_TEXT_REGION 202 234 209 234 50 HELIX 228 234 237 COLOUR_TEXT_REGION 228 234 237 234 50 HELIX 254 234 266 COLOUR_TEXT_REGION 254 234 266 234 50 STRAND 2 235 7 COLOUR_TEXT_REGION 2 235 7 235 51 STRAND 39 235 40 COLOUR_TEXT_REGION 39 235 40 235 51 STRAND 44 235 49 COLOUR_TEXT_REGION 44 235 49 235 51 STRAND 53 235 55 COLOUR_TEXT_REGION 53 235 55 235 51 STRAND 73 235 78 COLOUR_TEXT_REGION 73 235 78 235 51 STRAND 87 235 93 COLOUR_TEXT_REGION 87 235 93 235 51 STRAND 109 235 109 COLOUR_TEXT_REGION 109 235 109 235 51 STRAND 133 235 138 COLOUR_TEXT_REGION 133 235 138 235 51 STRAND 150 235 155 COLOUR_TEXT_REGION 150 235 155 235 51 STRAND 191 235 195 COLOUR_TEXT_REGION 191 235 195 235 51 STRAND 214 235 218 COLOUR_TEXT_REGION 214 235 218 235 51 STRAND 243 235 248 COLOUR_TEXT_REGION 243 235 248 235 51 STRAND 270 235 272 COLOUR_TEXT_REGION 270 235 272 235 51 HELIX 12 235 22 COLOUR_TEXT_REGION 12 235 22 235 50 HELIX 61 235 66 COLOUR_TEXT_REGION 61 235 66 235 50 HELIX 114 235 127 COLOUR_TEXT_REGION 114 235 127 235 50 HELIX 165 235 180 COLOUR_TEXT_REGION 165 235 180 235 50 HELIX 202 235 209 COLOUR_TEXT_REGION 202 235 209 235 50 HELIX 228 235 237 COLOUR_TEXT_REGION 228 235 237 235 50 HELIX 255 235 266 COLOUR_TEXT_REGION 255 235 266 235 50