SILENT_MODE
BLOCK_FILE jp_LZiaWRh.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_LZiaWRh.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 183 37   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 38 183 47 H SPACE
SUB_CHARS 1 38 183 47 E SPACE
SUB_CHARS 1 38 183 47 - SPACE
STRAND 19 41 27
COLOUR_TEXT_REGION 19 41 27 41 51
STRAND 46 41 47
COLOUR_TEXT_REGION 46 41 47 41 51
STRAND 63 41 69
COLOUR_TEXT_REGION 63 41 69 41 51
STRAND 100 41 105
COLOUR_TEXT_REGION 100 41 105 41 51
STRAND 120 41 124
COLOUR_TEXT_REGION 120 41 124 41 51
STRAND 174 41 182
COLOUR_TEXT_REGION 174 41 182 41 51
HELIX 33 41 39
COLOUR_TEXT_REGION 33 41 39 41 50
HELIX 52 41 56
COLOUR_TEXT_REGION 52 41 56 41 50
HELIX 137 41 140
COLOUR_TEXT_REGION 137 41 140 41 50
STRAND 19 46 27
COLOUR_TEXT_REGION 19 46 27 46 51
STRAND 46 46 47
COLOUR_TEXT_REGION 46 46 47 46 51
STRAND 64 46 69
COLOUR_TEXT_REGION 64 46 69 46 51
STRAND 100 46 105
COLOUR_TEXT_REGION 100 46 105 46 51
STRAND 118 46 123
COLOUR_TEXT_REGION 118 46 123 46 51
STRAND 174 46 181
COLOUR_TEXT_REGION 174 46 181 46 51
HELIX 33 46 39
COLOUR_TEXT_REGION 33 46 39 46 50
HELIX 52 46 56
COLOUR_TEXT_REGION 52 46 56 46 50
HELIX 60 46 63
COLOUR_TEXT_REGION 60 46 63 46 50
HELIX 84 46 88
COLOUR_TEXT_REGION 84 46 88 46 50
HELIX 137 46 141
COLOUR_TEXT_REGION 137 46 141 46 50
STRAND 19 47 27
COLOUR_TEXT_REGION 19 47 27 47 51
STRAND 45 47 47
COLOUR_TEXT_REGION 45 47 47 47 51
STRAND 63 47 70
COLOUR_TEXT_REGION 63 47 70 47 51
STRAND 99 47 105
COLOUR_TEXT_REGION 99 47 105 47 51
STRAND 120 47 124
COLOUR_TEXT_REGION 120 47 124 47 51
STRAND 157 47 158
COLOUR_TEXT_REGION 157 47 158 47 51
STRAND 175 47 182
COLOUR_TEXT_REGION 175 47 182 47 51
HELIX 33 47 38
COLOUR_TEXT_REGION 33 47 38 47 50
HELIX 52 47 56
COLOUR_TEXT_REGION 52 47 56 47 50