QUERY               : TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFE : QUERY 
UniRef90_E0XIZ3     : TQLCPFNEVFNITSFPSVYAWERMRITNCVADYSVLYNSSSFSTFQCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTGCVIAWNTNSLDSSN----EFFYRRFRHGKIKPYGRDLSNVLFNPSGGTCSAEGLNCYKPLASYGFTQSSGIGFQPYRVVVLSFE : UniRef90_E0XIZ3
UniRef90_P22432     : ---CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPTINNYNPSSWNRRYGFNDAGVFGKSKHDVAYAQQCPSYCPCAQPDI------VSACTSQTKPMAYCPTGTI----- : UniRef90_P22432
UniRef90_Q8BB25     : ---CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVYNPSSWNRRYGFNNQSFGSRGLHDAVYSQQC-------FNTPNTYCPCRTSQCIGGAGTGTCPVGTTV---- : UniRef90_Q8BB25
UniRef90_Q0Q484     : TNLCPFDKVFNATRFPSVYAWERTKISDCVADYTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWNTAKQDVGS-----YFYRSHRSSKLKPFERDLSSVEENG-------------RTLSTYDFNQNVPLEYQATRVVVLSFE : UniRef90_Q0Q484
UniRef90_S5TUR9     : ---CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSNPSTWNRRFGFTEQSVFKPTAHDVVYAQHCFNFCPCKLDGSLCVGPGIDAG-YKTSGIGTCP--------- : UniRef90_S5TUR9
UniRef90_A8R4D0     : ---CNMEDWLSAPTVASPLNWERRTFSNCNFNMSSLMSFIQADSFSCSNIDAAKLYGMCFGSVTIDKFAIPNSRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYSLGADNVTNPSAWNRRYGFND-TMFKPTNHDVVYSKQCNTYCPCKNNGATCVGNGISAGVSTTTGSGTCPVGT------ : UniRef90_A8R4D0
UniRef90_A7U544     : ---CKIEDWLTAKSVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASKVYGMCFGSVSIDKFAIPNRRRVDLQIGNSGFLQSFNYKIDSRATSCQLYYSLAQNNVTNPSSWNRRYGFNDVATFGSGKHDVAYAEECNDYCPCANPSIVSPCT------------------------- : UniRef90_A7U544
UniRef90_K9N5Q8     : --ECDFSPLLSGT-PPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLE------------ : UniRef90_K9N5Q8
UniRef90_Q9IKD1     : ---CKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASKVYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTNPSSWNRRYGFNDVATFHSGEHDVAYAEYCPCAKPSTVYSCVTGKPKSANCPTGTS--------------- : UniRef90_Q9IKD1
UniRef90_A3EXD0     : TQECDFTPMLTGTPPP-IYNFKRLVFTNCNYNLTKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYGKNYLYNAPYTPCLSLASRGFSTKYQSHSDGELTTT---------------- : UniRef90_A3EXD0
UniRef90_U5WHX9     : -----------------------------VADYSVLYNSTSFSTFKCYGVSVTKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFLGCVLAWNTNSKDSSTSGNYNYLYRWVRRSKLNPYERDLSNDIYSPGGQSCSAVGPNCYNPLRPYGFFTTAGVGHQPYRVVVLSFE : UniRef90_U5WHX9
UniRef90_Q5MQD0     : ---CDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTNPSSWNRRYGFNNHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTN--------------- : UniRef90_Q5MQD0
UniRef90_I4DEX0     : ---CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNRRKVDLQLGNLGYLQSSNYRIDTTATSCQLYYNLPAANVSNPSTWNKRFGFIEDSVFVPTNHSVVYAQHCFKAP------------------------------------- : UniRef90_I4DEX0
UniRef90_P11225     : ---CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPTINNYNPSSWNRRYGFKVNDRCQIFANILLNGINS--GTTCSPNTEVATGVCVRYDLYGITGQG------------ : UniRef90_P11225
UniRef90_Q14EB0     : ---CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTNPSSWNRRYGFSSYDVVYSDHCFSVNSDFCPCADPSVVNSCVKSKPLS----------------------- : UniRef90_Q14EB0
UniRef90_Q6SRF2     : TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHG-------------------------------------------------------- : UniRef90_Q6SRF2
UniRef90_E0ZN44     : ----PYSDIL---KPPQPIVWKRHTVTNCSFDFDAIVNRLPTFQLKCFGVSPAKLAQMCYSSVTLDIFRANTTHLANMLGKVPDVFSKYNYALPPDFYGCVHSYYINDSSRMYAIAQQWPATVIAPGGRQPYNSYVGTVLNTPN-PTCTQLTCFGV--------------------------- : UniRef90_E0ZN44
UniRef90_A3EXI2     : SQACKL-PYADIVSPPQPIVWRRYTVSSCSFDFESIVNNLPTYDLKCYGVSPARLAQMCYAGVTLDVMRINKTHYSNLIGNVPDLFTKYNYALPTNFYGCVHAYYINVTDGRYALATHYPATVITPGGRQPYNSYVATVLNTNNWCTRANCFGLVVIGLKPASGRQLV--------------- : UniRef90_A3EXI2
UniRef90_A3EXH4     : ----------DIVRPPQPVVWRRYTVTSCSFDFEAIVNRLPTFELKCFGISPARLAQMCYSSVTLDLFRANTTHLANMLGGVPDLFSKYNYALPSNFYGCVHAYYINDTNKDYAIAQRWPATPITPGGRQPYSDYVRTVLNTPNSCTTLTCFGVVVISLKPA--------------------- : UniRef90_A3EXH4
UniRef90_A3EXG6     : --------------PPQPVVWRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALPDNFYGCLHAFYLNSTAPYAVANRF----PIKPGGRQSNSAFIDTVINAAHYSPFSYVYGLAVITLKPAAGSKLV----CPV-------- : UniRef90_A3EXG6
UniRef90_A3EXJ0     : -ETCDI-PYAALQTPPQPIAWRRYAVSKCGFDFEAVINRLPTFELKCFGVSPARLASMCYGKVTIDVFRINVTHLANLIAGVPDAFSKYNYALPRDFYGCVHAFYVNMSSDYIIADS-WPAVVIQPGGRQTDSSLVGTWLNSPAKSHCTILSCFGV--------------------------- : UniRef90_A3EXJ0
UniRef90_A0A023Y9K3 : --ECDFSPLLKD-EPPQVYNFSRLVFTNCNYNLTKLLALFQVSQFSCHQVSPSALASGCYSSLTVDYFAYPTYMSSYLQQGSTGEISQFNYKQDFSNPTCRILATVPANLSASPKPSNYVWLSECYSFTGKNFQYVKAGQYTPCLGLAANGFEKSYQTHRD---------------------- : UniRef90_A0A023Y9K3
UniRef90_U5WHW8     : -----------------------------VADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDTGY-----YYYRSHRKTKLKPFERDLSSD------------DGNGVYTLSTYDFNPNVPVAYQATRVVVLSFE : UniRef90_U5WHW8
UniRef90_S4X276     : SEECDFTKMLTGT-PPQVYNFNRMVFTNCNYNLTKLLNLFQVSEFSCYQVSPSSLATGCYSSLTVDSFAFPLELSSYMQTGSAGPIRQFNYNQDFSKPTCRVLASVPSNYTALSKPSNYVHLTECYTLGYSAKQYHNTGQYTPCLQLFSRSGQSNSVELPSGEFKTATG-------------- : UniRef90_S4X276
UniRef90_A3EX94     : --ECDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCVMASVLANVTITKPHAYGY---------------------------------------------------------------- : UniRef90_A3EX94
UniRef90_F1DAZ1     : -------------RPPLPFYWRRFQIKSCKFDFNTLVSALPTYDLWCKGISPERLGSMCFGAVTLDSMLINTTHYNDLKSNVPDAFTRFNYKLPTNFYGCVHTYYL-NDSSFNYAVVNDPGWFIRPGGRPDNPGYLNTLAYKAASC------------------------------------- : UniRef90_F1DAZ1
UniRef90_U5LMM7     : --ECDLDVLFKNDA-PIIANYSRRVFTNCNYNLTKLLSLVQVDEFVCHKTTPEALATGCYSSLTVDWFALPFSMKSTLAIGSAEAISMFNYNQDYSNPTCRHAAVTANVSTNFTANANYAYISRCQGV------------------------------------------------------- : UniRef90_U5LMM7
UniRef90_T1PZ38     : ----------------------------------------QADSFTCNNIDAAKIYGMCFSSITIDKFAIPNRRKVDLQLGNLGYLQSSNYRIDTTATSCQLYYNLPAANVSNPSTWNKRFGFIEDSVFVPTNHSVVYAQHCFKAPKNFCPCSSCPG--------KNNGIGTCPAGT------ : UniRef90_T1PZ38
UniRef90_F1BYL9     : -QSCGAERLLNASQIPDPAFWKRHVIRNCKFNFSHIMALSHVYDMQCYGIDASKLPSTCWNEVYADVFRLAQDDFYSFKPSASGDLATYNYKLPSDFLGCTLILTNPNLYCGNS--------------------------------------------------------------------- : UniRef90_F1BYL9
UniRef90_L7UP84     : -EECDFDQFF--KNVSGIAKYSRASFLNCKYNMTKLLSLVAVDEFNCDRVTPQALASTCASSLVVDWFSFPISLKSYLQAGSSSPIVKLNYKQDYSNPSCR---VTGQISQTNVDAQYYVAW------------------------------------------------------------- : UniRef90_L7UP84
UniRef90_T1PZ58     : ----------------------------------------------------------------------------DLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTNPSSWNRRYGFNNHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTN--------------- : UniRef90_T1PZ58
UniRef90_L0GEB1     : --------------------------------------------------------------------------------------------IDTTATSCQLYYNLPAANVSNPSTWNRRFGFTEQSVFKPTDHDVVYAQHCFNFCPCKLDGSLCVGNGIDAG-YKHTGIGTCPAGTNYLT-- : UniRef90_L0GEB1
UniRef90_L0CQ80     : --------------------------------------------------------------------------------------------IDTTATSCQLYYNLPAANVSNPSTWNRRFGFTEQSVFKPTHHDVVYAQHCFKAPTNFRPCKLDGSLCVDPITSKSTGPYKCP--------- : UniRef90_L0CQ80

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181 :
OrigSeq             : TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFE : OrigSeq

Jnet                : ------------------EEEEEEEEE-----HHHHHHH------EE----HHHHH------EEEEEEE------------------------------EEEEEE--------------EEEEE------------HHHH---------------------------------EEEEEEEEE- : Jnet
jhmm                : ------------------EEEEEEEEE-----HHHHHHH------EE----HHHHH---HHHHEEEEEE--------------HHHHH-----------EEEEEE------------EEEEEE-------------HHHHH--------------------------------EEEEEEEE-- : jhmm
jpssm               : ------------------EEEEEEEEE-----HHHHHH------EEE----HHHHH------EEEEEEEE----------------------------EEEEEEE--------------EEEEE--------------------------------EE----------------EEEEEEEE- : jpssm

Lupas 14            : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : ---B-B--BB----BBBBBBB-BB-B--B-BBB-BBB--BBB--B-B--B-B--BB--BBBBBBBBBBBB---B---B-------B--BBB-B---BBBBBBBBBB---B--BB-BB-BBBBBB----B-----BB-BBBBBB-B--B---B-BBBB----B-B-----BB-BBBBBBBBBB- : Jnet_25
Jnet_5              : --------------------B----B------B--B---B----B-B-------B---B---BBBB-B-B-------B-------B------------BBBBBB----------------B--------------B--B----------------------------------B--BBBB--- : Jnet_5
Jnet_0              : -----------------------------------B---------------------------------------------------------------B-B---B----------------------------------------------------------------------------- : Jnet_0
Jnet Rel            : 898877777777777762564146662167743444422467741543663554413782202889987157751134666771101277777777752688874367776666777311687136777777776501111667776677777641234665456666777632689998718 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.