SILENT_MODE
BLOCK_FILE jp_fcRfRp7.concise.blc
MAX_NSEQ 57
MAX_INPUT_LEN 59
OUTPUT_FILE jp_fcRfRp7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 46   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 47 97 56 H SPACE
SUB_CHARS 1 47 97 56 E SPACE
SUB_CHARS 1 47 97 56 - SPACE
STRAND 4 50 6
COLOUR_TEXT_REGION 4 50 6 50 51
STRAND 52 50 56
COLOUR_TEXT_REGION 52 50 56 50 51
STRAND 60 50 71
COLOUR_TEXT_REGION 60 50 71 50 51
HELIX 21 50 27
COLOUR_TEXT_REGION 21 50 27 50 50
HELIX 33 50 39
COLOUR_TEXT_REGION 33 50 39 50 50
HELIX 43 50 47
COLOUR_TEXT_REGION 43 50 47 50 50
HELIX 78 50 89
COLOUR_TEXT_REGION 78 50 89 50 50
STRAND 4 55 6
COLOUR_TEXT_REGION 4 55 6 55 51
STRAND 51 55 56
COLOUR_TEXT_REGION 51 55 56 55 51
STRAND 60 55 70
COLOUR_TEXT_REGION 60 55 70 55 51
HELIX 21 55 27
COLOUR_TEXT_REGION 21 55 27 55 50
HELIX 33 55 38
COLOUR_TEXT_REGION 33 55 38 55 50
HELIX 43 55 46
COLOUR_TEXT_REGION 43 55 46 55 50
HELIX 78 55 88
COLOUR_TEXT_REGION 78 55 88 55 50
STRAND 52 56 56
COLOUR_TEXT_REGION 52 56 56 56 51
STRAND 60 56 71
COLOUR_TEXT_REGION 60 56 71 56 51
HELIX 21 56 28
COLOUR_TEXT_REGION 21 56 28 56 50
HELIX 33 56 39
COLOUR_TEXT_REGION 33 56 39 56 50
HELIX 43 56 47
COLOUR_TEXT_REGION 43 56 47 56 50
HELIX 79 56 89
COLOUR_TEXT_REGION 79 56 89 56 50