QUERY : NVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPP : QUERY
UniRef90_F1DAZ5 : -VTQNYGRRGPGKLEGNFGDLDMCKLGTDDPRFPVAAQMVPNTSSFLFMSHFTPRYEPDALWLDYTGSIKLPKDDPNFPQWEKLLADNIDAYQSFPP : UniRef90_F1DAZ5
UniRef90_A3EXJ4 : -VTANFGRRGPGELEGNFGDLEMLKLGADDPRFPAVAQMAPNVAAFMFMSHFSTRDEEDALWLNYRGAIKLPKSDPNFEQWTKLLEENLNAYKTF-- : UniRef90_A3EXJ4
UniRef90_V9VNB8 : -VDQVFGSRQKGR-ERNFGDDKMVEEGIRDGRTTAMLNLVPSSHAMLFGSNVQAKLQPDGLHVTFSFTTVVPREDPQFENYRQICDECVDGVGTRP- : UniRef90_V9VNB8
UniRef90_A0A023YAJ4 : NMVQAFGRRGPGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSNDYFLRYSGAIKLDPKNPNYQKWMELLEANIDAYKSFP- : UniRef90_A0A023YAJ4
UniRef90_U5LQW6 : NPTQAFGLRGPGDLQGNFGDLKYCKEGVDDPRWPQMAELAPSASAFLSMSQLKLVHHSNDYMLRYSGAIKLDPKNPNYSKWLEILEGNIDAYKNFP- : UniRef90_U5LQW6
UniRef90_Q96604 : -IDEVFGQRKKGKAP-NFGDDKMIEEGVKDGRLTAMLNLVPTPHACLLGSRVTAKLQPDGLHVSFEFETVVKRDDPQFDNYSKICDACIDGVGTRP- : UniRef90_Q96604
UniRef90_F1DAY0 : DVTTCFGPR---DTAHNFGDAELVRKGTEAPHYPQLAELVPTPAALLFGGEVVTREVGEEVEVTYVYKMRVPKDN----KNLPAFLKQISAY----- : UniRef90_F1DAY0
UniRef90_F1BYM6 : NVNAAFGRRGNGPYQGNFGDQEFNKLGTDYSKWPQIAQLAPTPSAFFGMSKLSVQKNTEGTWLAYNGYIKLDDNDPNFAVWINELSKHIDAYKEFP- : UniRef90_F1BYM6
UniRef90_A0A023VWD7 : -VNQVLGPRTKGK-ERNFGDDKMNEEGIKDGRVTAMLNLTPSPHACLFGSTVTHKLRSDGLHLKFEFTTVGPRDDPQFDNYVKICDERVDGVCTRP- : UniRef90_A0A023VWD7
UniRef90_S5YAG0 : SVEQCFGPRGGFK---NFGSADFVQYGVAAKGYPQAAALTPTSAALLFGGNVQVQELSDDIEITYTYKMTVPKSD----KNLEVFLSNVNAYKEAKP : UniRef90_S5YAG0
UniRef90_K4JZT7 : NVTACFGPR---DTLHNFGDQKLIAEGVQASHYPQLAELVPTPAALLFGGEVSTRERGDEVEIMYVYKMKVHKSNKD----LPAFLQQVSAYAQAP- : UniRef90_K4JZT7
UniRef90_F1DB24 : SVTACFGPR---DASRNFGDSKLIQEGVDAKEYPQIAELVPTSAALLFGSKVSVRETPNDFEIKFHYKMHVPKTD----KALSAFLPQVDAY----- : UniRef90_F1DB24
UniRef90_I2B1L1 : DVEKFYGAR---SSSANFGDSDLVANGNAAKCYPQLAECVPSTSSVLFGSYWTAKEDGDQVEVTFTHTYHLPKDDPKTSR----FLEQIDAYK---- : UniRef90_I2B1L1
UniRef90_C0LI68 : NVTQCFGPR---DFEHNFGNLEVLANGVKAKGYPQFAELVPSTAAMLFDSHIDTKEEGDSVVLTYTTRVKVPKDHPNLGK----FLEQLNAF----- : UniRef90_C0LI68
UniRef90_Q0Q0A0 : DVTTCFGRR---DASRNFGDGTLVREGVEAKYYPQLAELVPGTAALLFDSEISTKEAGEDVIITYHYRMKVPKSD----KNLSRFLQQVSAYAD--- : UniRef90_Q0Q0A0
UniRef90_Q0Q462 : SVEVCFGPRGG---TRNFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVATKEMADGVEITYTYKMLVPKDD----KNLEIFLAQVDAYKLGDP : UniRef90_Q0Q462
UniRef90_F1DB11 : NVTACFGER---SMSRNCGSKSVVAAGVEAPNFPQIAELIPTQAALFFGSRVSTKEDNDTVEIKYHYKMSVPKTNPN----LPYFLQQVNAY----- : UniRef90_F1DB11
UniRef90_T1SHZ3 : DVTNFYGAR---SASANFGDSDLVVNGNAAKRYPQIAECVPSVSSMLFGSQWSAEDDGDQVKVTLTHTYYLPKGDAK----TSLFLEQIDAYK---- : UniRef90_T1SHZ3
UniRef90_A6N8U4 : SVGACFGPRGGF---RNFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKMTVPKSDPN----VELLVSQVDAFKT--- : UniRef90_A6N8U4
UniRef90_A8JNZ6 : DVRKCFGPR---SASRNFGDSDLVQHGVEAKHFPTIAELLPTQAALAFGSEITTKEAGDFVEVTYHYVMKVSKTD----KNLPRFLEQVAAY----- : UniRef90_A8JNZ6
UniRef90_D3XGJ0 : -VESMFGKRRP---DANFGNADLVKVGSAGEHYPQLAEMVPSTASILFGGEWTSEEEGDDVVLTVKYSYKVPKGDK-----TTAFLQHINAYK---- : UniRef90_D3XGJ0
UniRef90_F1DAY7 : -VDKLFGPRGGWK---NFGSDEFVKLGVQAPGYAQAASLVPHPAALVFGGNVSVRELKDTYEIQYTYKATVPKSD----KNLEVFLQQVDAYKNGSP : UniRef90_F1DAY7
UniRef90_F1DB18 : --TACFGPR---DVSRNCGTKSVVALGVDAPHFPQIADLIPTPAALFFGSRVEVKEYKDEVEIKYHYKMNVPKEDPN----LPYFLQQVDAY----- : UniRef90_F1DB18
UniRef90_Q6Q1R8 : NVIQCFGPR---DFNHNMGDSDLVQNGVDAKGFPQLAELIPNQAALFFDSEVSTDEVGDNVQITYTYKMLVAKDN----KNLPKFIEQISAF----- : UniRef90_Q6Q1R8
UniRef90_Q5MQC6 : NVQQCFGKRGPSQ---NFGNAEMLKLGTNDPQFPILAELAPTPGAFFFGSKLDLVKRKDVFELHYSGSIRFDSTLPGFETIMKVLEENLNAY----- : UniRef90_Q5MQC6
UniRef90_B2BW44 : -VDQVFGSR---DTEKNFGDAEMIKKGMSDPRFTAALIPTPGPQAALFGSHVTLKEKPDGLEITYKYRTLFPKTDERYEEVKHAYLSNV-------- : UniRef90_B2BW44
UniRef90_P03417 : -VQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNDVYELQYSGAVRFDSTLPGFETIMKVLNENLNAYQN--- : UniRef90_P03417
UniRef90_Q0Q099 : SVTACFGPR---DVSRNFGTKGLVAEGVEYSHFPQIAELLPTQAALAFGSRVEVKDFKDEVEIKFHYKMNVPKEN----KNLQVFLDQVDAY----- : UniRef90_Q0Q099
UniRef90_D9J1Z8 : DVETMFGKR---SANSNFGDAELVKDGSSHKNYPQLAEMVPSTGALVFGGKWEATESGDDVIVTVNYSYKLPKNDPK----TTAFVGQIGAY----- : UniRef90_D9J1Z8
UniRef90_G3EM87 : -VESMFGKRRP---EANFGTSDLVNAGSSDKHYPQLAELVPGSAALLFGGKWTAKEESDDVVVTVKYSYTLPKGDK-----TTAFLKQIDAY----- : UniRef90_G3EM87
UniRef90_H9BQZ6 : -ISQVFGNRS--RTGANVGSADTEKTGMADSRIMALARYVPGVQEMLFAGHVDGQFQAGDITLTFTYSITVKDGTPDHARIKDALNTVVN--QNYEP : UniRef90_H9BQZ6
UniRef90_Q5GMZ1 : DVDSVFGARTKNK-PRNFGDDKMVEEGIKDGRTTAMLNIVPSSHALLFGGEVQSKLNPEGLAVTFTFTTTVDRNDPQFDNYVKICNECVNGVGTRP- : UniRef90_Q5GMZ1
UniRef90_H9BR39 : -ISAVFGKRSP--AGSNVGSADTEKAGMADGRIMALARQVPGVQEMLFAGHLSHQFQADAVTLTWTYSITIKSDSSDYDRIKQALDTVVDQTYEAP- : UniRef90_H9BR39
UniRef90_H9BR29 : -----FGKRSP--AKANVGSPDTEKTGLGDPRLMALMRFVPGTQELLFAGHLKHKMQPEGVQLTFTYDITVKRDNKDFDRIVEALNSVVD------- : UniRef90_H9BR29
UniRef90_B6VDW4 : -ITQVFGPRSP--TGANVGAPDIEKTGMADPRVMALSRHAPGVQELMFAGHVSSNFQANDITLTFTYSITVKEGTPDYQRVKDALNTIVDQKYEAP- : UniRef90_B6VDW4
UniRef90_H9BR12 : -ISQVFGARS--RSGANVGSADTEKTGMADPRIMALARHAPGVQELLFAGHLSSFQQEGALTLTFTYSITVKPDSPDYDRLKEALSSVVNQTYEAP- : UniRef90_H9BR12
UniRef90_G3C7B6 : --------------------SKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQAMGCSLKFEFTTVVPQNDPQFDNYVKICDQCVDGVGTRP- : UniRef90_G3C7B6
UniRef90_B8Y746 : -VDQVFGPRTKGK-EGNFGDDKMNEEGIKDGRVTAMLNLTPSPHACLFGSRVTPKLQHDGL------------------------------------ : UniRef90_B8Y746
UniRef90_H9BR21 : -ISQVFGKRTPG--GANVGSADTEKAGFTDPRLMCLMRHTPGTQELLLAGHLDHDIQPEGVYLKFTYTTQVKRDSAEYDRVIAALNNVVN------- : UniRef90_H9BR21
UniRef90_E5Q338 : ----------------------FVAEGAQHKQFPLVASLVPNTAAMLFGSEITTKEVGKDVVLEFKYKVQTSKDNPD----LGAFLQQLNAFAN--- : UniRef90_E5Q338
UniRef90_Q7M006 : NLKCVFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKN--------------------------------------- : UniRef90_Q7M006
UniRef90_V5MYE6 : -----------------------------DPQFPILAELAPTAGAFFFGSKLELEPQKDVYELRYNGAIRFDSTLSGFETIMKVLSENLNAYQQ--- : UniRef90_V5MYE6
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91----- :
OrigSeq : NVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPP : OrigSeq
Jnet : ---EEE--------------HHHHHHH-----HHHHHHH---HHHHH----EEEEE---EEEEEEEEEEEE------HHHHHHHHHHHH-------- : Jnet
jhmm : ---EEE--------------HHHHHHH-----HHHHHH----HHHH----EEEEEE---EEEEEEEEEEE-------HHHHHHHHHHH--------- : jhmm
jpssm : --------------------HHHHHHHH----HHHHHHH---HHHHH----EEEEE---EEEEEEEEEEEE-------HHHHHHHHHHH-------- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : -B--BBB-B----B--BBB---BB--B--B--BBBBB-BBBBBBBBBBBB-B-B------BBB-B-B-B-B------B--BB-BB--BB-BB----- : Jnet_25
Jnet_5 : ----B-----------------B-----------BBB--------BB-------------B-B-B-----B-------------B---B-------- : Jnet_5
Jnet_0 : --------------------------------------------------------------B---------------------B------------ : Jnet_0
Jnet Rel : 8522204677777777765278898861487517887603646666206804898648706899888998137887614589999986102688999 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.