SILENT_MODE BLOCK_FILE jp_No835ry.concise.blc MAX_NSEQ 820 MAX_INPUT_LEN 822 OUTPUT_FILE jp_No835ry.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 122 809 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 810 122 819 H SPACE SUB_CHARS 1 810 122 819 E SPACE SUB_CHARS 1 810 122 819 - SPACE STRAND 2 813 7 COLOUR_TEXT_REGION 2 813 7 813 51 STRAND 26 813 30 COLOUR_TEXT_REGION 26 813 30 813 51 STRAND 47 813 50 COLOUR_TEXT_REGION 47 813 50 813 51 STRAND 78 813 82 COLOUR_TEXT_REGION 78 813 82 813 51 HELIX 10 813 22 COLOUR_TEXT_REGION 10 813 22 813 50 HELIX 33 813 42 COLOUR_TEXT_REGION 33 813 42 813 50 HELIX 60 813 69 COLOUR_TEXT_REGION 60 813 69 813 50 HELIX 87 813 93 COLOUR_TEXT_REGION 87 813 93 813 50 HELIX 107 813 118 COLOUR_TEXT_REGION 107 813 118 813 50 STRAND 3 818 7 COLOUR_TEXT_REGION 3 818 7 818 51 STRAND 26 818 30 COLOUR_TEXT_REGION 26 818 30 818 51 STRAND 47 818 50 COLOUR_TEXT_REGION 47 818 50 818 51 STRAND 78 818 82 COLOUR_TEXT_REGION 78 818 82 818 51 HELIX 10 818 22 COLOUR_TEXT_REGION 10 818 22 818 50 HELIX 33 818 42 COLOUR_TEXT_REGION 33 818 42 818 50 HELIX 60 818 69 COLOUR_TEXT_REGION 60 818 69 818 50 HELIX 87 818 92 COLOUR_TEXT_REGION 87 818 92 818 50 HELIX 107 818 119 COLOUR_TEXT_REGION 107 818 119 818 50 STRAND 2 819 6 COLOUR_TEXT_REGION 2 819 6 819 51 STRAND 26 819 30 COLOUR_TEXT_REGION 26 819 30 819 51 STRAND 47 819 51 COLOUR_TEXT_REGION 47 819 51 819 51 STRAND 77 819 82 COLOUR_TEXT_REGION 77 819 82 819 51 HELIX 10 819 22 COLOUR_TEXT_REGION 10 819 22 819 50 HELIX 33 819 42 COLOUR_TEXT_REGION 33 819 42 819 50 HELIX 60 819 69 COLOUR_TEXT_REGION 60 819 69 819 50 HELIX 86 819 94 COLOUR_TEXT_REGION 86 819 94 819 50 HELIX 107 819 117 COLOUR_TEXT_REGION 107 819 117 819 50